Shewanella psychrotolerans: K0I62_02405
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Entry
K0I62_02405 CDS
T09306
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
spsj
Shewanella psychrotolerans
Brite
KEGG Orthology (KO) [BR:
spsj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spsj03021
]
K0I62_02405 (rapA)
Transcription machinery [BR:
spsj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
K0I62_02405 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QYK01853
LinkDB
All DBs
Position
complement(522813..525719)
Genome browser
AA seq
968 aa
AA seq
DB search
MPFSLGQRWISDTESELGLGTVVGLEDRMVTVMFPATDENRMFSRNDAPLTRVIYNPGDT
IESHEGWSLTVSELEEKNGLIIYHGVHAETGEQTSLRETLLNHNIRFNKPQDRLFAGQID
RLDRFGVRYQSQLLRHKLATSDLLGLQGPRVGLIPHQQWIAHEVGQRYAPRVLLADEVGL
GKTIEAGLIIHQQLLTGRAERILVIVPDTLRHQWLVEMLRRFNLRFSVFDEDRCVEAYAD
HDNPFYTEQLIICSLELLRKKKRLDQALEADWDLMVVDEAHHLEWTEEAPSRAYRVVEAL
SEVVPGVLLLTATPDQLGHQSHFARLRLLDPDRFYDYQAFLKEEASYKEVAIAADALACG
AKLPDDAVASLTELLSEKDITPTLRLIEDDSVDIDLRNDARDELLQELLDRHGTGRVLYR
NSRASVKGFPTRIFNAHPQTMPAQYVTAAKVSAMMGGSTDIKTKVKQALSPEKLYQAFES
DSASWWKFDPRVDWLIDFLKSHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMS
IIERDKAGAYFAQETGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLDR
IGQANDVEIHLPYLENTAQENLMHWYHKGLNAFEQTCPIGHILFSEFSEELLTQLVYQDE
DQFTQLLNHTQTRYKALKKAMEQGRDKLLEINSHGGDRANKLVESLAARDEDTQLIGSVI
RLWDIIGVEQEDSGENAIVLHPSEHMMFPTYPGLPEDGITVTFNREMALSRDDIALITQE
HPLVQTGLDLITSSETGTTSVAILKNKALPAGTIFLELIYMADASAPKSSQLYRYMPPTP
VRILLDKNGNNLSDNVSYESFDKQLSAVNRHIASKLVNASQTILHPLFAKAETFAETELE
LLRESARSKMTTQLTAELERLEALKAVNPNIRDEELEHLRSQMNELNTYLDGCLLQLDAV
RLVLVSHA
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgcccttttccttaggtcaacgttggattagtgataccgaatcagagcttggtttaggt
actgttgttggattagaagaccgtatggtcactgtgatgtttccggcaaccgatgagaac
cgcatgttttcgcgcaacgatgcgccattaacacgcgtaatttacaatcctggcgatacc
attgagagtcacgaagggtggagtttgacggttagcgaactggaagaaaaaaatggcttg
attatctatcacggtgtgcacgccgaaacgggtgagcaaaccagcctaagagaaaccttg
cttaaccacaatattcgttttaataagccccaagaccgcctatttgcaggccaaatcgat
cgtctcgacagattcggtgtccgttaccaaagccaactgttacgccacaaattagccacc
tcagatctacttgggttgcagggacctcgtgtcggcttaattccacatcagcagtggatt
gctcatgaagtgggtcaacgatatgcaccaagggtactacttgccgatgaagtgggcctt
ggaaaaaccatcgaagcgggtttgattatccatcaacaactgctaactggccgcgccgaa
cgtattctcgtcattgtgccagacactctgcgccatcaatggttagtggaaatgctacgc
cgctttaatctgcgcttctcggtatttgatgaagatagatgtgtcgaagcttacgccgat
cacgacaaccctttctatactgagcaattgattatctgctcactcgaactgctacgtaaa
aagaagcgcttagaccaagcgttagaagctgactgggatctaatggttgtcgatgaggct
catcaccttgaatggaccgaagaggcgccaagccgcgcttatcgtgtggttgaagcctta
agtgaagtggtacctggggtattattactgacggccaccccagatcagcttggccaccag
agtcactttgcccgtctgcgtctgctagatcccgatcgtttttacgattaccaggccttc
cttaaagaggaggcgagctacaaagaggtcgctatcgctgccgatgcactcgcctgcgga
gctaagcttccagatgatgctgttgcgagcctaacagaactgctcagtgaaaaagatatc
accccgaccctacgccttattgaagatgacagcgtcgatatcgatctgcgtaatgacgct
cgcgatgaattactgcaagaactattagatcgtcatggtacaggccgagtgctttatcgt
aatagccgcgcctcggtaaaagggttcccgacccgtattttcaacgcacatcctcaaacc
atgccagcacaatatgtgactgcggccaaggtatcggccatgatgggcggcagcactgac
attaaaaccaaagtaaaacaggcattaagccctgagaagctgtatcaagcatttgaaagc
gatagcgccagttggtggaaattcgatccgcgagtcgattggttaatcgactttttgaag
agccaccgcagcaagaaagtgctgatcattgccagccaagcagaaaccgccctcagcctt
gaagaggcattgcgtactcgtgaaggtattcaagctacggtattccacgaaggtatgtcg
attatcgagcgtgataaggcgggagcttactttgctcaagaaaccggtggtgctcaggca
cttatctgtagcgaaattggctcagagggacgtaacttccagtttgccagccatttggta
ctgttcgatctgccgctgaaccccgatctattagagcagcgtattggccgtctcgatcgc
atcggtcaagcaaacgatgtagaaattcatctaccttatcttgagaatacagctcaggaa
aacctaatgcattggtaccataaagggctaaatgcattcgagcaaacctgccctattggt
catattctgtttagcgagttttctgaggagctgttgactcaattggtttatcaagacgaa
gaccaatttacccagctactcaatcatactcaaactcgttataaagccttgaaaaaggcg
atggagcaaggtcgtgataagttacttgagatcaactcgcatggcggtgacagagccaat
aaattggtagagagtttagctgcgcgggatgaagatactcagcttatcggctcggtaatt
cgcctgtgggacatcataggtgtcgagcaggaagatagcggtgaaaatgccatcgtattg
catcccagtgagcatatgatgttccctacctatccaggcttacccgaagatggcatcacg
gtcacttttaaccgtgagatggcactgtctcgtgatgatatcgcgttgatcactcaggaa
cacccattggttcaaacgggccttgatttgatcacctcgtcggaaactggcacgactagt
gttgctatcttgaagaataaggcactgccagcaggtaccatcttcttagagctcatctat
atggctgatgcgtctgcaccaaaatcgagccagctttatcgttatatgccaccaaccccc
gtgcggatcttattggataagaatggcaacaatctgtctgataacgtcagctacgaaagt
ttcgataagcaactcagtgcggttaatcgccatatcgccagcaagctagtgaatgcctcg
caaacgattctgcacccgctgtttgctaaagcagaaaccttcgcagaaactgaacttgag
ttactcagagaaagcgcaagatccaagatgacaacccaattgaccgctgaacttgagcgc
ttagaagcacttaaagctgttaaccctaacattcgtgatgaagagttagagcacttgcgt
tcgcaaatgaatgaactcaatacctatttagatggttgcctactccaactcgatgcagtg
cgtctggtcttggtcagtcacgcctag
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