Shewanella psychrotolerans: K0I62_04330
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Entry
K0I62_04330 CDS
T09306
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spsj
Shewanella psychrotolerans
Pathway
spsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0I62_04330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsj03019
]
K0I62_04330
Enzymes [BR:
spsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0I62_04330
Messenger RNA biogenesis [BR:
spsj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0I62_04330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
UTP25_NTPase-like
UvrD-helicase
AAA_22
Gag_p24
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QYK02210
LinkDB
All DBs
Position
complement(979215..980513)
Genome browser
AA seq
432 aa
AA seq
DB search
MRFESFSFAPEIVRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL
QKMVDNPSETQRSNTRALILAPTRELAAQVADNIKEYSRYLPISVLTIYGGVKMDSQAQK
LKKGADIIVATPGRLLEHIQACNLSLSHVDFLVLDEADRMLDMGFISDIQKILQAVNSKR
QNLLFSATFSNAVKQLANEMLVKPKLISVDKQNTTAVTVSQVVYPVEQRRKRELLSELIG
TKNWQQVLVFTATREAADTLVKELNLDGIPSAVVHGEKAQGNRRRALREFKEGKVRALVA
TEVAARGLDIPALEYVVNYDLPFLAEDYVHRIGRTGRAGRSGVAISLVSREEERTLHDIE
KLIGNKIRRITIPGYEVGSRELLIKHLQKRRSFAKRQQRTDNVGAQVVAEKNLGTRRVKL
KNSANAKIKKPK
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgaatcttttagttttgctccagagattgtgcgcgctatctccgattgtggc
tatcaaaaaatgacgcctattcagcagcaagccattccagccattcgtcgcggccaagat
gtgctagccagtgcacaaacagggacgggtaaaaccgccgcatttgccctgcctatattg
caaaaaatggtcgacaacccaagcgagactcaacgttcaaatacccgcgcgctaatttta
gcgccaactcgagagctggccgcgcaagtcgctgataatatcaaagagtacagccgctat
ctgcccatatctgtgttgaccatctacggcggcgtcaaaatggattctcaggcacagaag
ttaaagaaaggtgccgatattatcgtcgctacaccaggccgtctactggaacatattcag
gcttgtaacctaagcttatctcatgtcgatttcttagtactcgatgaagccgaccgtatg
ctggatatgggctttatcagtgacattcaaaaaattctgcaagcggttaatagcaaacgt
caaaacctgctattttctgcgaccttctcaaatgcggtaaaacagctcgcaaacgagatg
ttagttaaaccaaaactcattagtgtcgataagcaaaacaccaccgctgtgacagtaagt
caagtggtctacccagtagagcaacgccgcaaacgtgagttactatcagagttgattggt
actaagaactggcaacaggtactggtatttaccgccactcgagaagctgccgatacctta
gttaaagagctaaacctcgatggtatcccttcagccgtagtacacggcgaaaaagcccaa
ggaaatcgtcgccgtgcgctgcgtgaatttaaagagggtaaagtacgcgctttggttgcc
accgaagtggctgctcgcggcttagatattccagcgctagaatatgtcgttaactacgat
ctgcccttccttgcagaagattatgtccaccgtattggccgtacaggccgtgcaggtcgc
agcggcgtcgccatctctttggtcagtcgtgaagaagagcgcaccttacacgacatcgaa
aaattgatcggtaataagatccgccgtattacgatcccaggctacgaggttggtagtcga
gagctactgatcaaacatctacagaaacgtcgcagtttcgccaagagacaacagcgaacc
gacaacgtcggtgcccaagttgtcgccgaaaagaatttagggactcgccgagtgaagctg
aagaactctgctaacgctaaaataaagaagcccaaataa
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