Shewanella psychrotolerans: K0I62_05290
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Entry
K0I62_05290 CDS
T09306
Symbol
rpoS
Name
(GenBank) RNA polymerase sigma factor RpoS
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
spsj
Shewanella psychrotolerans
Brite
KEGG Orthology (KO) [BR:
spsj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spsj03021
]
K0I62_05290 (rpoS)
Transcription machinery [BR:
spsj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K0I62_05290 (rpoS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
HTH_IclR
Put_DNA-bind_N
HTH_20
Motif
Other DBs
NCBI-ProteinID:
QYK02377
LinkDB
All DBs
Position
1191756..1192730
Genome browser
AA seq
324 aa
AA seq
DB search
MGRTKSTAVAEPLVDLSKNESDVSLMDSKEIAKEAELEQQVQEDLQKNLDATQLYLGEIG
FSPLLSAEEEVYFSRKSLKGCAKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLG
LIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARELA
HKLDHEPTAEEIAEQLDLPSSDVSRMLKLNERITSVDTPLGGDNDKALLDVLADDDCVGP
DYKVQDEDMSKSVVRWLDELNSKQREVLARRFGLLGYEPSTLENVGKEIGLTRERVRQIQ
VEALKRLRDLLGSQGLSVEAIFRV
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgaacaaaatctaccgctgttgcggagcccttggtggacttatcaaaaaatgag
tctgacgtttcattaatggatagcaaagagattgcaaaagaggctgaattagaacaacaa
gtccaagaagatttgcaaaagaatttggatgccactcagctatatctgggtgagattgga
ttttcccccctattgagcgcggaggaagaggtttatttttcacgaaagtccctcaagggc
tgtgctaaatctcgtaaccgtatgattgagagtaatctcaggctcgtcgttaaaatagct
cgtcgttataacaatcgtggattagcgctgttagatcttatcgaagaaggtaatttgggt
ctaattcgtgcggtagagaagtttgatcctgagcgcggtttccgtttttctacttacgct
acatggtggattagacaaacgattgagcgggcaataatgaaccaaactcgcacgattcgc
ttacctattcatgtcgttaaagagttaaatgtctatttgcgtaccgcacgtgaattggct
cataaactcgatcatgagcctacagcagaagagatagctgagcagttagatctaccgagt
agcgatgtcagtcgtatgctgaagttaaatgagcgtattacttctgttgatacacctcta
ggtggtgataacgataaagctttactggatgtattagctgatgatgactgcgttggacct
gactataaggttcaagatgaggatatgtctaaatcggttgtacgttggttagatgaatta
aatagtaaacaaagagaagtattagctcgtcgttttggtttgttaggctatgagccttcg
acattagaaaatgttggtaaagagattggtcttacccgtgaacgagtacgccaaatccaa
gtggaagcgttgaaacgtcttcgtgatctgttgggatcacaaggtttatcggtagaagcc
attttccgagtgtaa
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