Shewanella psychrotolerans: K0I62_06195
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Entry
K0I62_06195 CDS
T09306
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
spsj
Shewanella psychrotolerans
Pathway
spsj03030
DNA replication
spsj03430
Mismatch repair
spsj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spsj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K0I62_06195 (dnaE)
03430 Mismatch repair
K0I62_06195 (dnaE)
03440 Homologous recombination
K0I62_06195 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spsj03032
]
K0I62_06195 (dnaE)
03400 DNA repair and recombination proteins [BR:
spsj03400
]
K0I62_06195 (dnaE)
Enzymes [BR:
spsj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K0I62_06195 (dnaE)
DNA replication proteins [BR:
spsj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
K0I62_06195 (dnaE)
DNA repair and recombination proteins [BR:
spsj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
K0I62_06195 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QYK02535
LinkDB
All DBs
Position
1376132..1379605
Genome browser
AA seq
1157 aa
AA seq
DB search
MSEPRFVHLRVHSDFSMSDGLAKVKPILAKASELEMAALALTDKTNLCGLVKFYSGCHGA
GIKPIIGTDFSMLVPGFEDEFCSITVLAMNNEGYKNLTLLISDAYLRGHIRDRAVIDQEW
LIKYSEGLILLSGAKDGDVGKALLKGNTGQVDSLIEFYQTHFPERYYLELIRTGRADEER
YLHMAVELATQKGLPVVATNQVVFIQPEQFEAHEIRVAISDGYTLADPRRPKTYSEQQYF
RSQDEMCELFEDIPEAIINTVEIAKRCNVTVRLGEYFLPNFPTGELSIEDFLVEASKKGL
EERLEFLFPDEQERIARRSEYDERLDVELTVINNMGFPGYFLIVMEFIQWGKDNGIPIGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKMIPAEPGMTLAKAFEAEPA
LPEAYHADEEVKDLIDMCRILEGVTRNAGKHAGGVVIAPTVITDFAPLYCDSEGHNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPRLEKEGKEPVRIEAIPLDDPASFRLL
QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSYPDSQYQHESLKTLLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSIFKEGAINNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPS
QFMAAVMSADMDNTDKIVTLVDECDRMGLPLLPPDVNKGLFRFTVDDDQRIVYGIGAIKG
VGEGPVDSILKARQDGPFKDLFDFCARIDLKKLNKRVIEKLICAGALDTLGPHRASMMAT
LPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTPWPDKIWLEGERETLGLYL
TGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVVATRVMMTKRGSKMGLVTLDDK
SARLEVMLFTEAFEKFGHLLEKDRILIIEGEVSFDDFSGGNRMTARNIIDMGEARSHFAQ
AVEIDVESNAIDTQWLAHFEQALLPWKQGSVPVIINYAQPQAKAQFKLGDEWRVNPTDEL
MLALETLTGSDKVRIVF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacctcgtttcgtgcatctgcgcgttcacagtgatttttctatgtctgatggc
ctcgcgaaagtgaagcctattcttgctaaagccagcgaacttgaaatggcagcgcttgcc
ttgaccgacaagaccaacctgtgtggtttggttaagttttatagcggatgccatggagcg
gggataaagccaattattggcactgatttttcgatgctggtgccaggatttgaagatgag
ttctgttcaatcacagtgctcgccatgaataacgaaggttataaaaatctgactttgctg
atcagtgatgcctatttacgtggtcatattcgagaccgcgcggtcatagatcaagagtgg
ttgattaagtatagtgaagggctcattttgctctctggcgccaaagatggtgatgtaggc
aaggcgctgttaaaagggaatactgggcaggttgactctttgattgagttttatcaaacc
catttccccgagcgatattatcttgagttaattcgtactggccgtgccgatgaagagcgt
tacctgcatatggcggtagagttggcgactcaaaaaggactccctgtcgttgccactaac
caagtggtgtttattcaacccgagcagtttgaagcacatgagatccgcgtagcgatttcc
gatggttatactctggccgatcctcgtcgcccgaaaacctatagtgagcagcagtatttt
cgctcgcaagatgagatgtgtgaactgtttgaggatattcctgaagcgattatcaacacg
gttgagatcgctaaacgttgtaacgtcacggttaggctcggagagtatttcctgcctaac
ttccccacgggtgagctttcaatcgaagactttcttgtagaagcctctaagaaggggctt
gaagagcgtcttgagtttttgttccccgatgagcaagagcgtattgcgcgccgcagcgag
tatgatgagcggctagatgtcgaattgaccgtgattaataacatgggttttcccggttac
ttccttatcgtaatggagtttattcaatggggtaaagataacggtatccctattggtcca
ggtcgtggttcgggggctggctcgttagtggcttacgcgcttaaaattaccgatcttgat
ccgctagagtttgacctactattcgaacgtttcttgaaccctgaacgggtatccatgccc
gatttcgacgtcgatttttgtatggaccgccgtgacgaggtgatcgatcacgtggccgag
ctttatggccgcgatgcggtatcacagatcataactttcggtaccatggcagcgaaagcg
gtggtacgagatgttggccgtgtgctcggtcatccctatggttttgttgaccgaatttcg
aaaatgatccccgcagagccggggatgacgctagctaaagcctttgaggcagagccagcg
cttcctgaggcttatcatgccgatgaagaagtcaaagatctcatcgatatgtgccgcatc
ttagaaggtgtgacgcgtaacgcgggtaaacatgcgggtggtgtggtgatcgcgcccacg
gtgatcactgatttcgcgccactttattgtgactccgaaggtcataatccggtcacccag
tttgataaaaatgatgtggaaaccgcgggtctggttaagttcgacttcttaggactgaga
acattaaccattattgactgggcgttgcagatgattaatccgcgcctagagaaagagggt
aaagagccagttagaattgaagcgattccgctcgacgaccccgcctcatttagactgttg
caacgttacgaaaccaccgcggtattccagctcgaatcccgcggtatgaaagatctgatt
aaacgtcttcagcccgattgcttcgaagatatgatcgcactggttgcgctgtttagaccc
ggcccattgcagtctggcatggtagataactttatcgagcgtaagcatgggcgtgaagag
gtgtcataccctgactctcaatatcaacatgagtcgttaaaaacgctccttgaaccaact
tacggcattatcttgtaccaagaacaggtgatgcagattgctcaggtactttctggctat
accctcggcggcgcggatatgctgcgtcgtgctatgggtaagaaaaagcctgaggagatg
gcgaagcagcgtagtattttcaaagagggtgccatcaataatggtgtcgatggcgagctg
tcgatgaagatcttcgatttggtggaaaagttcgccggctacggttttaacaagtctcac
tccgctgcttacgcgttggtttcttaccaaactttgtggcttaaaacccactatccatcg
caatttatggcagcggtaatgtctgccgatatggataacacagataaaattgtgacactc
gttgatgagtgcgaccgcatgggcctacctctgttaccacccgatgtgaataagggctta
tttaggtttaccgtcgatgatgaccaaaggattgtgtatggcatcggtgcgattaagggc
gtaggggaagggccagtcgattcaattttaaaagcgcgtcaagatggaccttttaaagac
ctatttgatttctgtgctcgtatcgatttgaaaaagctgaataagcgggtaattgaaaag
cttatctgcgcaggcgctttagatacattaggtccacatcgcgcctcgatgatggccacc
ctgccagaggctattcgcgccgcagatcagcatgcaaaagccgaggctattggtcaacat
gatatgtttggcttgctcaacagtgaacctgaagatagcaagcagcagtttgtcgaatgt
acgccttggcctgataaaatttggctagaaggcgagcgtgaaaccttaggtttatacctc
acgggtcatccgataaatcaatatcttaaagagttgaagcactacacttcgggtcgtttg
aaagacgtgcatcctaccgagcggggtaaaaccatgaaagccgcaggacttgttgtcgct
acgcgagtgatgatgaccaagcgtggctcaaaaatggggctggtgacgttagatgataag
agtgcccgtttagaggtgatgctgtttaccgaagcgtttgaaaagtttggccacctgtta
gaaaaggaccgcattttgattattgaaggagaggtcagtttcgatgacttctctggcggt
aatcgtatgacggcgcgtaatattatcgatatgggtgaggcaaggagtcactttgctcaa
gcggtagagatcgatgttgaatctaacgccattgacactcagtggttagcccattttgaa
caagccctattgccgtggaagcagggctcagtaccagtgattattaactatgcacagcct
caggctaaggcacaatttaagcttggtgatgagtggcgggttaaccccaccgatgagcta
atgttggctctggagacgttaacgggttctgataaggttaggatagtgttctaa
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