Shewanella psychrotolerans: K0I62_08680
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Entry
K0I62_08680 CDS
T09306
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
spsj
Shewanella psychrotolerans
Brite
KEGG Orthology (KO) [BR:
spsj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsj03019
]
K0I62_08680 (hrpA)
Enzymes [BR:
spsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K0I62_08680 (hrpA)
Messenger RNA biogenesis [BR:
spsj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K0I62_08680 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
SLFN-g3_helicase
T2SSE
nSTAND_NTPase5
nSTAND3
NACHT
ResIII
WHD_HA2
AAA_25
PhoH
Motif
Other DBs
NCBI-ProteinID:
QYK02984
LinkDB
All DBs
Position
1946249..1950130
Genome browser
AA seq
1293 aa
AA seq
DB search
MHLNSPLHPLSNGFLKQCYQADVSKIRRRLFRLNKQADSDKKRDELAKLEELAIAAATKV
KQRREGIPKICYPEELPISQKRDEIARAIAGHQVVIVAGETGSGKTTQLPKICLELGLGS
RGLIGHTQPRRLAARSVATRVAEELNSPLGEVVGFKVRFADAIKPSSYIKLMTDGILLAE
LTSDKFLDQYDTIIIDEAHERSLNIDFILGYLKSVLKKRPDLKVIITSATIDVERFSKHF
NNAPVIEVSGRTYPVETRYRPLVREQDEDLDLTEGIFAAVEELMREGPGDILIFMNGERE
IRDVADQLNRQQYRNTEILPLYARLSYGEQSKVFKSHIGRRIVLATNVAETSLTVPGIRY
VIDPGTARISRYSYRTKVQRLPIEAISQASANQRQGRCGRVAPGICIRLYDELDFNNRPE
FTDPEILRTNLASVILQMLAIGLGDIEGFPFIQPPDSRYIRDGFLLLEELQSVKKYKGQL
QLTPLGRQLASIPVDPRLARMVIQANEYGCLHEVLVITAGLSIQDPRERPIDKKQAADEC
HRRFNDKDSDFVAWVNLWEHIKTEQKALSASQFRKLCKQEFLAYLRVREWQDLYTQLRQA
VHDLKWKLNSEPADHELLHKSLLTGLLSHIGFKDKDNEYLGARNRKFFVFPGSPLAKKGP
KWIMAAEMTETSRLFARCCAKIQPEWVEPLAAHLIKKNYVEPHFEAKQGSVVALENQQLY
GLTIVNRRRTQYGPINPVEAREIFIRSALADGELRTNEAFFVKNRKLLEDIEALEHKSRR
RDILVDEQALVDFYEHRIPQGIYNAPKLLSWWKKEKKTNPDLLDFEREQLMKRGDEHVSA
LDFPDYWHQGNLKLSLSYHFEPADLDDGVSVHIPVALLNQIDNAGFDWLVPGLREEKCIA
LIKSLPKTLRRNFVPAPDYARACLQAMNSTDMSLLDAMCKQLLRMSGVRISPDDFDTSQL
TAHLLINFKVEDDKGRLVAQSRDLDSLKGQLQGQVTQAIRNVAETGIEQKELTQWSFGAL
PKQYEKRKGNFEVKAFPALVDDKTSVSIALFDDENEAKRAHRTGLQRLLLINIPSPVKHL
QNTLPNKAKLAMYFNPFGQVQILIDDILSAAVQQLLDEKGLDVRSAEQFDAAKEWVRQEL
NPTAAKIALQVEEILTLYQKVKKRLKGKISLDIAFAMSDIQTQLDKLVFKGFVEQCGWQR
LADLVRYLKAIDNRLDKLPVDPNRDRLHLHSITNVQNLLDQQLAKVPRTSPIPEALLDAR
WMIEEYRVSCFAQVLGTAYPISEKRIINRINEA
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
ttgcatttgaattcgccacttcaccccctatctaatggtttcttaaagcagtgttatcaa
gcagatgtgtctaaaataagacgtcgtctttttcgcttaaataagcaagccgactccgat
aaaaagcgtgacgaattagctaaactcgaagagcttgctattgccgcagccactaaggtt
aagcagcgccgagagggcatacctaagatctgttaccctgaagagctgcctatttcacaa
aagcgtgatgaaattgcgcgcgcgatagcgggtcatcaagtggtgattgttgcaggtgaa
acggggtcgggtaagaccactcagttacctaaaatctgtttagagcttgggttaggctcg
cgcggactcattggtcatactcagccgcgtcgtttagcggctcgtagcgtcgcaactcgt
gtggccgaggagttaaacagtccgttaggcgaagtggtgggctttaaggtgcgtttcgcc
gatgcaattaagccaagctcttatattaagttaatgaccgatggcattttattggcagaa
ctgacctcggataagtttctcgatcaatatgacaccattattatcgatgaagctcatgag
cgtagtctgaatattgatttcatcttggggtacctaaagagcgttcttaagaagcgtcca
gatcttaaagtgatcatcacctcggcaactatcgatgttgagcgcttctccaaacatttc
aataatgcgccagtgattgaagtttcaggccgtacctatccggtagaaactcgatatcgt
ccattagtacgtgagcaagatgaagatctggatttaaccgagggaatttttgcggcggtt
gaagaactgatgcgagagggccctggtgatattttgattttcatgaacggtgagcgcgaa
attcgtgatgttgccgatcagcttaatagacaacaataccgtaataccgaaattctacct
ctgtatgcgcgtctctcctatggtgagcagtctaaagtatttaagagccatattggtcgg
cgcattgtactggcgactaacgtggccgaaacctcacttaccgtgccgggcattcggtat
gttatcgatcctggtaccgctcgtattagccgatatagctatcgcacaaaggtgcagaga
cttcccattgaagcgatttctcaggccagtgctaaccagcgtcagggccgttgtggtcgt
gtggcaccggggatctgtattcggctctatgatgagctagatttcaataatcgtcctgaa
tttaccgatcccgagatcttacgaactaaccttgcgtcggttattttacagatgctcgct
atcggacttggtgatatcgaaggcttcccctttattcagccgcccgattcacgttacatt
cgcgacggttttttactgcttgaagagctgcaatcggttaaaaaatacaagggacagcta
cagttaacgccgcttggtcgtcaattagcgtctattccagtcgatcctcgacttgcacgt
atggtgattcaggccaacgaatatggctgtttgcatgaagtgttggtgatcaccgcgggt
ttgtcgatacaagatcctcgtgaacggccgatcgataaaaagcaggccgccgacgaatgt
catcgccgttttaatgataaagattctgattttgtggcgtgggtgaatctttgggagcac
ataaagacagagcaaaaagcactatcggccagccaattcagaaaactctgtaaacaggag
tttttagcctatttgcgggtgcgcgaatggcaagatttatacacccaactgcgtcaagct
gtgcatgatcttaaatggaaactcaacagcgagccagcagatcacgaattgctgcataag
tcactgttaacgggcctattaagtcatattggctttaaagacaaagataacgagtattta
ggtgcccgtaaccgtaagttctttgtattccccggttcacctctggcaaagaaagggccg
aaatggatcatggcggcagagatgacggaaacctctcgcttgtttgcgcgttgctgcgcc
aaaattcaaccagaatgggtggaaccattagctgctcacctgattaagaaaaactatgtt
gagccccatttcgaagcgaaacagggcagtgtagttgcacttgagaatcagcagctatat
ggcctcaccatagtgaatcgccgccgtacccagtatggcccgattaaccctgttgaagcc
cgagagatctttattcgcagtgcccttgctgatggtgagctacgtactaacgaagccttc
ttcgtgaagaatcgtaagctactcgaggatattgaagccttagagcataaatctcgtcgc
cgtgatattttggttgatgagcaggctctcgtcgatttttatgagcataggatcccgcaa
gggatctataacgcgccgaaactgctgagctggtggaagaaggaaaagaaaaccaatccc
gatctactcgattttgaacgcgaacagttgatgaagcgtggtgatgagcatgtgtcagca
ctggatttccccgattactggcaccaaggtaacctaaagctgagcttgagttaccatttt
gaacccgcagatcttgatgatggtgtatcggttcatattcccgtggcgctgctcaatcaa
atcgacaacgccggttttgattggttggtgccaggcttgagagaagagaaatgcatagca
ttaatcaagtcactacctaagaccttacggcgtaactttgtgccagcgcccgattacgct
agggcgtgtttacaggcgatgaattcgaccgatatgagtttactcgacgcgatgtgcaaa
cagttactacgtatgagtggcgtgcggatctcccccgatgatttcgatacatcccagctg
accgcgcacttgttgattaattttaaggttgaagatgataaagggcgattagtggctcag
agccgtgatttagactccctaaaagggcaacttcaaggccaagtgacacaagcaattcga
aatgtcgccgaaacggggattgagcagaaagagctaactcagtggagttttggcgcttta
cctaagcaatatgaaaagcgtaaaggcaactttgaggttaaggcttttcctgcattagtg
gatgacaaaaccagtgtttccattgcgctgtttgatgatgagaatgaggcgaagcgagcc
catcgtactggcttacagcgattgttattaattaatattccgtcgccagttaagcacttg
caaaataccttgccaaacaaagctaagctggcaatgtactttaatccctttggccaagtt
cagatcttgattgacgatattctttcggccgcagtgcagcagctattggacgaaaaaggt
ctagatgtacggagcgcagagcagttcgatgccgcaaaagagtgggtacgccaagagctt
aatcctacagcggctaaaatagccttgcaggttgaagaaattctaactttatatcagaag
gttaaaaagcgtctaaagggtaagataagcctagatattgcgtttgccatgagtgacata
cagacccagctcgataaattagtctttaaaggctttgtcgagcaatgcggttggcaaaga
ctcgctgacttagtgcgttatctaaaagccattgataatcgactcgataaacttcctgta
gaccccaacagagacagattacacctgcacagcattaccaatgtgcaaaatttgctggat
cagcagttggcgaaggtcccgagaacgtcaccgataccagaagctctgcttgatgcgcgt
tggatgattgaagagtatcgagtgtcctgttttgcacaagtattgggtacggcttatccg
atttcagaaaagcggatcatcaatcgaattaacgaagcttaa
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