Shewanella psychrotolerans: K0I62_09600
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Entry
K0I62_09600 CDS
T09306
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
spsj
Shewanella psychrotolerans
Pathway
spsj03420
Nucleotide excision repair
spsj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spsj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K0I62_09600
03430 Mismatch repair
K0I62_09600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spsj03400
]
K0I62_09600
Enzymes [BR:
spsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K0I62_09600
DNA repair and recombination proteins [BR:
spsj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K0I62_09600
MMR (mismatch excision repair)
Other MMR factors
K0I62_09600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
Viral_helicase1
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QYK03146
LinkDB
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Position
complement(2161164..2163014)
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AA seq
616 aa
AA seq
DB search
MADTHSLQEVDKEIYQYLNLDSPTSFLLFAGAGSGKTRTLVNVLQAVRDNDLHRFIKAGQ
RIAVITYTNAACEEIKHRLQYDPIFAVSTIHSFVWELIQPFTSDMKIWLEADLKASIDDL
QAKIYKAQDKSGKTAVKNARSRDSKLKRLEKLDIVQNFTYSPTSTRLTTGSLTHAEVIKI
ATEFLTEQPLFQKVLVNKFPILLIDESQDTNKGLMDAFIQTQKNNSGCFSLGLFGDLMQR
IYSGGKEDLATSLPENWKTPEKKTNFRSPKRVIKLINKIRQEDDGKQQTAKPDAEEGIVR
LFIAQTPNENKSEVEARIREQMKAITDDENWKDVSQVKTLTLEHAMAARRGEFDEFFTPL
STEDSLRDSLLNGTSSTFKFCTHQVLPLANAIRKENDFEVMRIIKKHSHLIGGENKDFLA
DPIALLASVEDAVSKVRALLKNDISLRELLSLIEKNQLLEIPDILNDLLLEGIADLAEGV
ESPSIQKAWDTALDARLSHVENYAKYVADELGFTTHQGVKGLEFDRILAVIDDKDSKGFL
FKYEKLFGAENLSATDKKNEANGIDSVLSRTRRLFYVICSRAEKSLAVVAYSQEPSAVKN
RAIDAEWFDEDEIILI
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggcagatactcatagtcttcaagaggttgataaagagatttatcaatatctaaacctt
gacagccctactagttttttattatttgctggagctggatcgggtaaaaccagaactctt
gtaaatgttcttcaggcagtacgtgacaatgaccttcataggtttataaaagcaggacag
cgcattgccgttatcacctacacaaatgctgcttgtgaagaaattaagcatcgccttcaa
tacgatccaatatttgctgtctctaccatacacagctttgtttgggagttaattcagcca
tttacgagcgatatgaaaatatggttggaagccgacctaaaagcaagtattgatgattta
caagcaaaaatttataaagcacaagacaaatctggtaagacggcagtaaagaacgctcga
agtagagattcaaaattaaaacggttagaaaaactcgacatagtacagaattttacatac
agcccaactagcacacgattgacaacagggtctttgacacatgcagaggtaatcaaaatt
gccactgaatttttaactgaacagccactgttccaaaaagtgttagttaacaagttccct
atactactcattgacgagagtcaggatacaaataaaggtctgatggatgcatttatacag
acccagaaaaataattcaggctgcttttctttaggtctttttggtgaccttatgcagaga
atttatagcggaggtaaagaagacttagcgacaagtctacctgagaactggaaaacaccc
gaaaagaaaaccaactttcggagccccaaaagggttatcaagctgattaataaaattagg
caagaggatgatggtaaacaacaaactgcaaagccagatgcagaagaaggtattgttcgc
ttatttattgcccagacacctaatgaaaataaatcagaagttgaggctcgtataagagag
cagatgaaagctataactgatgatgagaattggaaagatgttagtcaggtaaaaacatta
acgcttgaacatgccatggcagctcgtagaggagagtttgacgaatttttcactccattg
tcaacggaggatagcctaagagattcattactaaacggaacgagttcaacatttaaattt
tgtactcatcaggttttacctttggctaatgcgattcgtaaagaaaatgactttgaagtt
atgagaattattaagaaacattctcatttgatagggggagagaataaagacttccttgca
gatccgatagcactattagcttctgtggaggatgcagttagtaaggttagagctttgctg
aaaaatgacattagcctcagagaattattgtcattaatagagaagaatcaactgttagaa
atccccgatattttgaacgaccttttactggaaggtatcgcagatctcgcagagggcgtt
gagtcaccttccatccaaaaagcttgggatacagcacttgatgcaagactgagtcacgtt
gaaaactatgcaaaatatgtggccgacgagctaggttttactacccaccagggagttaaa
gggttggaatttgatcgcattttggcagtaatagatgacaaagactcaaagggctttctt
ttcaagtatgagaagctctttggcgctgaaaatctgtcggctacagataagaaaaatgag
gcgaatggtatagactccgtcttatccagaaccagacggttgttctatgtaatatgcagt
agggcggagaagagccttgctgttgttgcttactcacaagagccttcagcagtcaagaat
cgtgctattgatgctgaatggtttgatgaagatgaaataatactgatttag
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