Shewanella psychrotolerans: K0I62_12325
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Entry
K0I62_12325 CDS
T09306
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
spsj
Shewanella psychrotolerans
Brite
KEGG Orthology (KO) [BR:
spsj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spsj03400
]
K0I62_12325 (phrB)
Enzymes [BR:
spsj01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
K0I62_12325 (phrB)
DNA repair and recombination proteins [BR:
spsj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
K0I62_12325 (phrB)
Prokaryotic type
K0I62_12325 (phrB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
QYK00212
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All DBs
Position
complement(2800761..2802182)
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AA seq
473 aa
AA seq
DB search
MSCIYWIRRDVRVHDNPALVEAIAQGVKTAVFISTPSQWQQHDLAPIKADLIRRHLRLLA
KQLDALGIEFVHLQASDFADQQQVLLSFCQAHNINTVFANTEPELDEVERDNHIARRNIE
LKLFQCDSILPPGTVLNQQGTMFKVFTPFKKAWLKRVQEVGIACVPTPGVVIDHHTAERF
ERVQEVDQIDDIIFDYPLVDSSAWPESDRVMELVIPKFWQQKLLDYANTRDIPSIKGTSG
LSPYLAIGAISPRWLAVQLIQAQPEVIYDQAHGAFSWLNELIWRDFYKHLLFHYPNLIKG
ESFQVKYQLAQWRGSDEDFKAWCEGRTGYPIVDAAMKQLLHTGWMHNRLRMIVASFLTKH
LLVDWRKGERFFMQHLIDGDFSANNGGWQWAASTGCDAQPYFRIFNPITQSQKFDPQGVF
IRKYLPELENVPDKQIHFPHDYFNKHGIETDYCKPIVDHKAARLRALDFYQSY
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
ttgagttgtatttattggatccgtcgtgatgtaagagtccatgataatcccgccttggtt
gaggctattgcccaaggcgttaaaaccgcagttttcatctcaacgccatcgcagtggcaa
caacatgatttagcccctatcaaggcggatttgatcaggagacatttgcggttgttggcc
aaacaactcgatgccttaggtatcgagtttgtgcatttacaggcgtcagattttgcagac
cagcaacaggttttgcttagtttttgccaagcccataatatcaataccgtttttgccaat
accgagccagagcttgatgaagtcgaacgtgataatcatattgctcgtcgcaacatcgaa
ctgaaactatttcagtgcgatagcattttaccgccaggcactgtgctgaatcagcaaggg
acaatgttcaaggtttttaccccttttaaaaaagcgtggctaaaacgggttcaggaggtt
ggcattgcatgtgttccaacgcctggcgttgtcattgaccaccatactgcagagcgtttc
gagcgagttcaagaggttgaccaaattgatgacattattttcgattatccgctagtagac
tcatctgcatggcctgaaagtgaccgagtcatggagcttgttatccctaaattttggcaa
caaaagttacttgattatgccaatactcgtgatatcccgagtatcaagggcacatcaggt
ttgtctccctatttggcgataggagccataagccctcgttggcttgcggttcaacttatt
caagcgcaacccgaggtgatttatgatcaggctcatggtgcgttttcttggttaaatgag
ctaatttggcgagatttttataagcatttgctgtttcactaccccaatttaattaaaggc
gaaagttttcaggttaaatatcaattggcgcagtggcggggcagtgacgaagactttaaa
gcatggtgtgaaggtcgaaccggttatcctattgtcgatgccgcgatgaaacagctgttg
cacacaggctggatgcataatcgattacgtatgattgtggccagctttctgaccaaacat
ctgcttgtcgattggcgcaagggggagcgcttctttatgcagcatcttattgatggtgat
ttcagtgctaataatgggggttggcaatgggccgcgagtacaggatgtgatgcacagccc
tattttcgaatatttaatccgataactcagagccaaaaatttgatcctcaaggcgttttc
attcgtaagtatttaccagagcttgaaaacgtgccggataaacagattcattttccccat
gattattttaataaacatggtattgaaactgattactgcaagccaatagtcgaccataag
gctgcacgtttgagggcgttagatttttatcaatcgtattag
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