Shewanella psychrotolerans: K0I62_13925
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Entry
K0I62_13925 CDS
T09306
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spsj
Shewanella psychrotolerans
Pathway
spsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0I62_13925 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsj03019
]
K0I62_13925 (pnp)
03016 Transfer RNA biogenesis [BR:
spsj03016
]
K0I62_13925 (pnp)
Enzymes [BR:
spsj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
K0I62_13925 (pnp)
Messenger RNA biogenesis [BR:
spsj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
K0I62_13925 (pnp)
Transfer RNA biogenesis [BR:
spsj03016
]
Prokaryotic type
tRNA degradation factors
K0I62_13925 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
KH_KhpA-B
RNase_II_C_S1
DUF6946
aRib
Motif
Other DBs
NCBI-ProteinID:
QYK00490
LinkDB
All DBs
Position
complement(3146866..3148968)
Genome browser
AA seq
700 aa
AA seq
DB search
MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVD
PEISPEVISMIGTSAALSISGIPFNGPLGSACVGYVNGEYILNPTVSQLVDSELELSVAG
TENAVLMVESEANALPEEVMLGAVVYGHQQQLVVVEAIKELRAEVNKPVWDWKPAIVDED
LVAKIKDLAEVSLTNAYQITAKHERRDAVIAIKEDVTAKLVEENPDVDLREVDKLLGSLE
KKVVRGRIIAGNPRIDGREPDMIRALNVMAGVLPRTHGSALFTRGETQALVTCTLGTERD
AQKIDSIMGEYTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGIKAVMPTAEEF
PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITQEIMQIALQQAYGARVHILNVMDQAI
SGHREEISDHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKIASSN
GEATQEAIRRIQEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN
VSDYLEVGQEVKVKVMEVDRQGRVRLSMKEAQPKEEVASE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccaatcgtaaaaagttttgaatatggtcaacatacagtcacgctagagactggg
gttattgcacgtcaagctgacgctgctgttttagcaagtatgggtgatacaacagtttta
gttactgttgtcggaaagaaagctgaagagccaggtcgtgacttttttccattaaccgtt
aattaccaagaaaaaacatatgctgctggtaaaatccctggtggattcttcaagcgcgaa
ggccgcccatcagaaggtgaaacattaactgcacgtctgattgaccgtccaattcgtcca
ctatttccaaatggtttcaaaaacgaagttcaggttattattactgttgtttctgttgat
cctgaaattagcccagaagttatctctatgataggtacttcagctgcgctatctatttca
ggtattccatttaatggtccactcggttcggcatgcgtcggctatgtgaatggcgaatac
atcctaaacccaaccgtttctcagttagttgacagcgaacttgaattgtcagtagcaggt
actgaaaacgcagtacttatggttgagtctgaagcgaatgcgcttcctgaagaagttatg
ttgggtgccgtagtttatggtcaccagcaacaactggttgttgttgaagcaattaaagag
ctacgtgccgaagttaacaagccagtatgggattggaaaccagctatcgtagatgaagac
ttagttgctaaaattaaagatttggctgaagttagtttaactaatgcatatcaaattacg
gcaaaacatgaacgccgtgatgcagttattgctattaaggaagacgtgacggctaagttg
gttgaagaaaatccagatgtcgatctgcgtgaagttgacaagttacttggtagcttagag
aagaaagttgttcgtggtcgtatcattgcgggtaacccacgtatcgatggccgcgaacca
gatatgatccgtgcgctaaacgtcatggcgggtgtattgccacgtactcacggtagcgcg
ctgtttacacgcggtgaaactcaggcgttagtcacttgtacccttggtactgagcgtgat
gcacaaaagattgatagcatcatgggcgaatacactaatcgctttatgcttcactataat
ttccctccatactctgttggtgaaaccggtatggttggttcgccaaagcgtcgtgaaatt
ggtcacggtaagctagcttggcgtggcattaaagctgttatgccaacggctgaagagttc
ccatacagcgttcgtgttgtatctgaaatcacagaatcaaatggttcaagctcgatggct
tcagtttgtggtacttcactagcccttatggatgccggtgtaccaatcaagacttctgtg
gctggtattgctatgggtctagttaaagaaggtgacgatttcgtcgtactttctgacatt
ctaggcgatgaagatcacttaggtgacatggactttaaagttgctggtactcgtgacggt
attactgcactgcagatggatatcaagatcgaaggtatcactcaagagatcatgcagatt
gcacttcagcaagcctatggcgctcgtgttcatatcctaaatgtaatggaccaagcgatt
tcaggtcaccgtgaagagatctcagatcacgctcctcgtattaccaccatcaagatcaat
cctgaaaagatccgtgatgtgattggtaaaggcggcgcaacgattcgtgcattgactgaa
gagactggtacgactatcgaacttgatgacgatggtacagtgaaaattgcttcttcaaat
ggtgaagcgactcaagaagcgattcgtcgtattcaagagatcaccgctgaagtcgaagtg
ggtactgtatacaacggtaaagtggttcgcatcgttgacttcggtgcattcgttaccatt
cttccgggtaaagatggtctagtacacatttcacaaatcgctgaagagcgtgtagcaaat
gtttctgactacctagaagtgggtcaagaagttaaagttaaggtgatggaagttgatcgc
caaggtcgtgtacgtctttcgatgaaagaagctcagcctaaagaagaagttgctagcgag
taa
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