Shewanella psychrotolerans: K0I62_15910
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Entry
K0I62_15910 CDS
T09306
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
spsj
Shewanella psychrotolerans
Brite
KEGG Orthology (KO) [BR:
spsj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spsj03016
]
K0I62_15910 (thpR)
Enzymes [BR:
spsj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
K0I62_15910 (thpR)
Transfer RNA biogenesis [BR:
spsj03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
K0I62_15910 (thpR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
QYK00857
LinkDB
All DBs
Position
3602634..3603191
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AA seq
185 aa
AA seq
DB search
MIKRLFLGVSPTQDQAQLLARTQSLISTDGRAIPKDNFHVTLYFLGQVDELQQTQLIKTL
NQLNAQNKLKRFSVDLETIEWWQKPKVICQSGTAKDFALIELHQTCLQLSHALNLHQSEH
PFTPHITLFRKARKYSPRQIPPLTITAHELHLYHSVSGEDGVSYPIIHSWPLIPSTHDVK
KNAPK
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
atgattaaacgactatttctcggcgtcagcccgacacaagatcaagcccagctcctagcc
cgcacccaatcactgataagcactgatggacgggctattcccaaagataattttcatgtc
actctctattttcttggtcaagttgatgagctacaacaaacacagttgataaagaccctg
aaccaacttaatgctcaaaacaaacttaaacgctttagtgtcgatttagaaaccatcgag
tggtggcagaaacctaaggtaatttgtcagtcagggaccgcaaaggatttcgcccttatc
gaactgcatcaaacctgtctgcagttaagtcatgcattgaatttacatcaaagcgaacac
ccatttacgcctcatatcactctgtttcgtaaagcgaggaagtattctccacggcaaatc
cccccgctaacgataacggcccatgagttgcatctgtatcactctgttagcggcgaagat
ggcgtcagttatcctattattcattcatggccactcataccatctactcatgatgtcaaa
aaaaatgcgcccaaatag
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