Shewanella psychrotolerans: K0I62_16550
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Entry
K0I62_16550 CDS
T09306
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spsj
Shewanella psychrotolerans
Pathway
spsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0I62_16550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsj03019
]
K0I62_16550
03009 Ribosome biogenesis [BR:
spsj03009
]
K0I62_16550
Enzymes [BR:
spsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0I62_16550
Messenger RNA biogenesis [BR:
spsj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0I62_16550
Ribosome biogenesis [BR:
spsj03009
]
Prokaryotic type
rRNA helicases
K0I62_16550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QYK00973
LinkDB
All DBs
Position
3766943..3768742
Genome browser
AA seq
599 aa
AA seq
DB search
MSSEERTFRELGLSEPLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAF
ALPLLNAIDPTSNTPQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLN
ALRRGPQIIVGTPGRVMDHMRRGTLKLESLKAMVLDEADEMLKMGFIDDIEWILEHTPKQ
RQLALFSATMPEQIKRVANKYLSEPVHVKIAATTTTVETIEQRFVQVSQHNKLEALVRVL
EVEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIII
ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI
ERATNSRISPMDVPSPETVTERRLSRLGEQISEVIAKDSLDFMKGAVAQLCQELEVDTDV
LAAALLQQVQKDRPLQLPPINERQRDRSDDRSSRDRGDRAPRERSRRDSRPTPTNLGKAD
ALKDNPDVKMCRYIIDVGRDHGVGVGNIVGAVANEANIDSRYIGQIQLFDSMTAIDLPDG
MPKDVLQHLKKVRVCGKPLNIREAGTEQPANSGDDSRPPRRRKPAGDRKPHRKGGKDNA
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgaagaaagaactttccgcgaactcggtctatccgagcctttgttgcgtgct
cttgacgagcttggttacgaaaaaccaacaccaattcaatctgctagtatcgaccctctt
atggccggtaaagatattttgggtcaagcgcaaacaggtactggtaaaaccggtgctttt
gcacttccattattaaatgctatcgatcctacctcaaacacaccacaaattttggtgtta
gccccaactcgtgaacttgcggttcaggttgcagaggcatttggtagctactctaaattc
atgaaaggtttgcatgtactgccaatatacggcggccaaagcatgcatcaacaacttaac
gcacttcgtcgtggcccacagatcattgttggtacaccaggccgagttatggaccacatg
cgtcgtggcactcttaaattagagtcactaaaagcaatggtgcttgatgaagctgatgag
atgctaaaaatgggcttcatcgatgatatcgaatggatcctggagcatacgccgaagcaa
cgtcaactcgcactattctcagccactatgcctgagcaaattaagcgtgttgctaacaaa
tatttatctgagcctgtacacgttaaaatcgctgcgaccacaactacggttgaaaccatt
gaacagcgttttgtacaagtatcacagcacaacaaactagaagcacttgtgcgcgttcta
gaagttgaaaagactgaaggtattattatcttcgttcgtactcgtaacagttgtgttgag
ctagccgagaagctagaagctcgcggttatgcttcatcaccgctacatggtgatatgaac
cagcaagcacgtgaacgtgcggttgatcagcttaaacgtggcaagttagacattattatt
gctactgacgttgcggctcgtggtcttgacgttgagcgtatcggacacgtagtaaactac
gatattccatacgatacagaagcttatgttcaccgtatcggccgtactggtcgtgctggt
cgtacaggtatggcgattctttttgttacacacagagagatgcgcatgctgcgcaccatc
gaacgtgcaaccaatagccgtatctcaccaatggacgtacctagcccagagacagtaaca
gagcgtcgtctttctcgcttaggtgagcagatttctgaagtgattgctaaagattcttta
gacttcatgaaaggcgctgttgcacaactatgtcaagagttagaagttgatacagacgta
cttgctgcggctttgttgcaacaagttcagaaagatcgccctctgcagctacctcctatc
aacgagcgtcagcgcgacagaagtgatgaccgtagttcgcgtgaccgtggtgatcgtgct
cctcgcgaacgtagccgtcgcgactcacgtccaacgccgaccaaccttggtaaagctgat
gctctaaaagataatcctgacgttaagatgtgtcgctatattatcgatgtaggtcgcgat
catggtgttggagtaggtaacattgttggcgcagtagctaacgaagctaacatcgacagt
cgttatatcggtcaaattcaactatttgattcaatgacagcaattgacctacctgacggt
atgccaaaagatgtactacaacaccttaagaaagtgcgtgtttgtggtaagccactaaac
attcgcgaagcgggtactgaacagcctgcaaacagtggtgatgacagtcgtccaccacgt
cgccgcaagccagctggcgaccgtaaaccacatcgcaaaggtggtaaagacaacgcataa
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