Shewanella psychrotolerans: K0I62_16820
Help
Entry
K0I62_16820 CDS
T09306
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
spsj
Shewanella psychrotolerans
Pathway
spsj02020
Two-component system
spsj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spsj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
K0I62_16820
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K0I62_16820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spsj03021
]
K0I62_16820
Transcription machinery [BR:
spsj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K0I62_16820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
QYK01022
LinkDB
All DBs
Position
3818483..3819976
Genome browser
AA seq
497 aa
AA seq
DB search
MKASLQLKMGQHLTMTPQLQQAIRLLQLSSLELQQEIQQALESNPLLELDEEQEGADSDA
REERNDNNETYEVDYDNKLQVDSSEDNSGLETSDALTQDSMPDELPVDTTWDEVYTASSN
SSSGAMRDDDMPFQGETTEGLYEHLEWQKNLTPFSDNDLAIATAIIDAIDERGYLTQTCD
DILEAMGDPEIELDEIEAVLKRVQHFDPIGVAARDLSECLTIQLAQYSDDTPHIANARML
ISEHLDLIAGRDFRLLMRKTKLKEDDLRDAISLIQTLNPRPGLAITASRDEYVIPDVTVT
KKKGRWVVELNPDSMPKINVNQHYAAMARSTKSQADGQFIRGHLQEAKWFLKSLESRNET
LLKVTNCIVDFQQGFFEFGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFEL
KYFFSSHVGTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGIKVARRTIA
KYREALLIPPSNQRKSL
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgtcacttcagctcaaaatgggtcagcatttaaccatgacaccccagttacaa
caagcgattcgtttgttgcaattgtcgtcattggaactgcaacaagagatccagcaggca
ttagaatctaaccctcttttagagttagatgaggagcaagagggcgccgatagcgacgct
cgagaagagcgcaatgataataatgaaacctacgaagtcgattacgataataagctgcaa
gttgactccagcgaggacaattctggcttagaaacatccgacgcgctcacccaagattcc
atgcctgatgaactccccgttgataccacgtgggatgaggtatacacagcctcatctaac
tccagttcaggcgcgatgcgcgacgatgatatgccttttcaaggggaaacgactgaaggc
ttgtatgaacacctcgagtggcaaaaaaatctcactcccttttcagataacgatttagcc
atcgctacagccattatagatgccatcgacgaacgcggttacctcacgcaaacctgcgac
gatattcttgaagccatgggcgatccagaaatcgaactcgatgagatcgaagcggtactc
aaacgcgtccagcatttcgatcctattggcgttgccgcccgagatctcagtgaatgctta
accattcaattagcgcagtacagtgatgatacaccgcatatagctaatgcaagaatgctc
attagtgaacatttagatcttatcgcgggtagagattttcgcctattgatgcgtaaaact
aagctaaaagaagacgatttacgtgatgcgatctcactgatccagacgctcaatccgcgt
cctggactggcaatcaccgccagccgcgacgagtatgttatcccagatgtcaccgtgacg
aagaaaaaaggtcgctgggtcgtagagcttaatcccgatagtatgcctaaaattaatgta
aatcagcattatgccgctatggctcgcagcactaagagccaggcggatggacagtttatt
aggggccacctacaagaagcgaaatggttcttgaaaagtttggagagccgcaacgaaacc
ctgttaaaagtcaccaactgtattgttgattttcagcaaggcttctttgagtttggcgaa
gaagcgatgaagccgatggtgctaaacgacattgcagaagccgttgaaatgcatgaatcg
actatctctcgagtaacaacgcaaaaatatatgcacaccccgagaggcatttttgaacta
aaatactttttctctagccatgtgggaaccgacgatggtggtgagtgctcttctactgca
atacgggcatttattaaaaagctcgtcgcagcggaaaaccaaaagaaaccactaagtgac
agcaaaatggctcaacttttggcggagcaaggcataaaagttgcgagacgtacaattgct
aaatatcgagaggcattattaataccgccatcgaaccaacgtaaaagtttgtaa
DBGET
integrated database retrieval system
