Shewanella psychrotolerans: K0I62_17105
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Entry
K0I62_17105 CDS
T09306
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
spsj
Shewanella psychrotolerans
Pathway
spsj03420
Nucleotide excision repair
spsj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spsj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K0I62_17105 (uvrD)
03430 Mismatch repair
K0I62_17105 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spsj03400
]
K0I62_17105 (uvrD)
Enzymes [BR:
spsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K0I62_17105 (uvrD)
DNA repair and recombination proteins [BR:
spsj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K0I62_17105 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
K0I62_17105 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
ResIII
Motif
Other DBs
NCBI-ProteinID:
QYK01074
LinkDB
All DBs
Position
complement(3875741..3877942)
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AA seq
733 aa
AA seq
DB search
MDVSSLLDGLNDKQREAVSAPQSSMLVLAGAGSGKTRVLTHRIAWLMQEYQQSPYSILAV
TFTNKAAAEMRERVEKVSGSSMGRMWIGTFHGLAHRLLRTHYQDANLPQSFQILDSDDQL
RLIKRILKSLNLDEKQYPPRQAQGYINGKKDQGLRPKHIDAGGFPIEQNLLKIYQVYQES
CDRAGLVDFAEILLRAHELWLNKPHILEHYQDRFKNILVDEFQDTNAIQYAWIRVLAGNT
ANVMIVGDDDQSIYGWRGAQVENLHKFLDDFPRAQTIRLEQNYRSSANILNASNELIANN
PERLGKKLWTEDKAGEPIGVYCAFNEMDEARFIVGRIMDWQDMGGNLSDCAILYRSNAQS
RVLEEALLHKGMAYRIYGGLRFFERQEIKDAMGYLRLISNKNDDAAFERIINTPARGIGG
RTLDILRSTARQQELTLWQTCLCALDEKLLSGRAANAVRGFMDLIVELQQDTEEQSLHRM
TDHVIQASGLKTMYETEKGEKARARVENLEELVTAARTFVMPEDLEDMGELNAFLSHAAL
EAGEGQADAFTDAVQLMTLHSAKGLEFPMVFMSGVEEGIFPSQMAMDEGDRLDEERRLCY
VGMTRAMKQLYITYAESRRIYGRENFARPSRFIKEIPSEFVQEIRLKAQVTAPVNRFTNR
ISDAISESRNRPVRAVAGHDSGFSIGQRVMHFKFGEGKVIDLEGTGEQAVIEVNFDDVGR
KRLKIAFARLEKC
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcttctttactcgatggtttaaacgacaaacagcgtgaagccgttagcgcg
ccgcaatctagcatgttggtgttagcgggcgcgggcagtggtaaaacacgagtgctaacc
catcgtattgcatggctgatgcaagagtatcagcagagtccttattcaattttagcggtg
acctttaccaacaaggcggcggctgagatgcgtgagcgtgttgaaaaagtcagtggtagc
agcatggggcggatgtggatcggtaccttccatggtttagctcatcgcttgttgcgcact
cattaccaagatgccaatttgcctcaaagctttcaaattctcgactctgacgaccaactt
agactgattaaacggattcttaagagtctcaatcttgatgagaagcagtatcctccgcgt
caggctcaaggctatattaacggtaagaaagaccaaggtttacgcccaaagcatattgat
gcgggtggctttcctattgagcaaaacttactgaaaatttatcaggtttaccaagagtct
tgcgatcgtgcaggccttgtcgatttcgccgaaatcttattacgagcccacgagttatgg
ctcaataagccccatatcttagagcattatcaagacagatttaaaaatattctcgtcgac
gagtttcaagataccaacgcgattcagtatgcctggatccgtgtgcttgcgggcaatacg
gccaacgtgatgatcgtgggtgatgatgatcagtccatttatggctggcgcggcgcacag
gtggaaaacctgcataaattcttagacgatttcccacgcgcacagacgatacgcctggaa
caaaattatcgttctagtgccaatattcttaacgcatcgaacgaattgatcgctaataac
ccagaacgtctgggtaaaaaactgtggaccgaagataaggctggtgaaccaattggggtt
tactgtgcttttaatgagatggatgaggctcgctttatcgtcggtcggatcatggattgg
caagatatgggcggcaacttaagtgactgtgccattctctatcgatctaacgcccagtct
cgtgttttagaggaagcgttattacacaaagggatggcatatcgcatctatggcggtttg
cgtttcttcgagcgccaagagattaaagatgccatggggtatctgcgcttaatcagcaat
aaaaatgatgacgccgcgtttgagcgaattattaatacaccggcgagaggtataggtggc
cgcactttagatattttgcgctctacggcgcgtcagcaggagctaacattatggcaaacc
tgtttatgtgcactcgatgaaaaactgctgagcggccgtgccgccaatgcggtgcgtggc
tttatggatctaattgttgagttgcaacaggatacagaagagcaatccttacatcgtatg
acagaccatgtgatccaagcgtcgggtcttaagaccatgtatgaaactgaaaagggtgaa
aaggctcgcgcaagagtagaaaacttagaggagctggttaccgccgctcgtacttttgtg
atgcctgaagacctcgaagatatgggcgagcttaatgccttcttatcccatgcggcgcta
gaggcgggcgaggggcaggcggatgcatttaccgatgcggtgcagcttatgacattacac
tcggctaaaggcttggaatttcctatggtattcatgtctggtgtcgaagaggggattttc
ccgagtcaaatggcgatggatgaaggcgataggctcgatgaggagcgccgtctctgttat
gtggggatgacccgcgccatgaaacagctatatatcacctacgctgaatcgaggcgtatc
tatggccgcgaaaatttcgcgcggccatcgcgttttatcaaagagatcccgagcgagttt
gtacaagagatccgcctaaaagcgcaagtgacagcgccagtaaatcgatttactaaccgg
atctcagatgctattagcgaaagtcgtaaccgcccagtgagagcggtggctggtcatgac
tctggctttagtattggccagcgagtaatgcactttaagtttggcgaaggcaaggtgatc
gatctcgaaggtactggtgagcaggccgttatcgaagtgaactttgacgatgttggacgc
aagcgtttaaagattgcttttgctcgcttggaaaaatgctaa
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