Shewanella psychrotolerans: K0I62_17465
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Entry
K0I62_17465 CDS
T09306
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
spsj
Shewanella psychrotolerans
Pathway
spsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0I62_17465 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsj03019
]
K0I62_17465 (rhlB)
Enzymes [BR:
spsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0I62_17465 (rhlB)
Messenger RNA biogenesis [BR:
spsj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0I62_17465 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ResIII
PH_NISCH_C
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QYK01135
LinkDB
All DBs
Position
complement(3963944..3965251)
Genome browser
AA seq
435 aa
AA seq
DB search
MSETHLTNQKFADFSLHPEIQKALIESGFEYCTPIQALSLPILLQHKDIAGQAQTGTGKT
LAFLVATFNHLLTTPVPEGRETNQPRAIVMAPTRELAIQIAKDANLLAKHTGLKVGIVFG
GESYDVQRKVLDKGVDILIGTTGRIIDYVRQGVLNVSSIQAVVLDEADRMFDLGFIKDIR
FLFRRMPDAKSRLNMLFSATLSMKVQELAYDHMNDPEKVEIAPSEKTSKNITEEIFYPSQ
EEKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWAHLEGDGHRVGLLTGDVPQKKRIRILE
QFTSGELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISISFA
CEEYALNLPAIESYIQHTIPVTNYDSEALLDDLPPPVRIHRKHTTRPAGRPGSGKPQGGR
PGARPRRHDRTRRHS
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaacacatttaacaaatcaaaagtttgccgacttttctcttcatccagagatc
caaaaggcactaatcgaaagcggctttgaatattgcacacctatccaggcattatcatta
ccgattttacttcagcataaagatattgcgggtcaagcgcagacgggtacaggtaaaacc
ttagcctttctagtcgccacctttaaccacttactgacaactcctgttcctgaaggtcgt
gaaactaatcagcctcgtgcgattgttatggcgcctacacgtgagttggcgattcaaatt
gctaaagatgcaaatttacttgctaaacatactggtctaaaagtcggtattgtctttggt
ggtgaaagctacgatgtgcagcgtaaggtgctggataagggcgtagatattttgatcggt
acaaccgggcgtattatcgattatgttcgccaaggtgtactgaacgttagttcgattcag
gccgtagtgctcgatgaagccgatcgtatgtttgatctgggttttatcaaggatattcgc
ttcctatttagacgtatgcctgatgccaaatcacgtcttaatatgttgttttcagctacg
ctgtcgatgaaagtgcaagagttggcttatgatcatatgaatgatcctgaaaaagtcgaa
attgcacctagcgaaaaaacctcgaaaaatattactgaagagatcttttatccttcacag
gaagagaagatgcgcttgctgctgaccttgatagaagaagattggcctgaaaaagcgatt
gtattctctaacactaagcacagctgcgaaaatctatgggcgcatctagaaggtgacggt
catcgcgttggcttgcttactggtgatgtgccacagaagaagcgtattcgcattcttgag
cagttcacctctggcgagttagatatcttagtggcaactgatgttgcggcgcgtggatta
catatttcagatgtgtcgcacgtttacaactatgatttacccgatgattgcgaagattat
gtacaccgtatcggtcgtaccggacgtgctggtcaaaaagggatatcaattagttttgcc
tgtgaagaatacgcgcttaacttgccagccatcgagagctacattcagcatactatccct
gtgactaactatgatagtgaagccttgcttgatgatcttcctccaccagtacgaattcat
cgtaaacatacgacacgcccagcgggtcgtcctggtagtggtaaacctcaaggtggtcgc
cctggtgcgcgtccaagacgtcatgataggactcgtagacacagttaa
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