Sphingomonas sp. So64.6b: G4G27_09800
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Entry
G4G27_09800 CDS
T11422
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
spso Sphingomonas sp. So64.6b
Pathway
spso02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spso00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
G4G27_09800 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spso03021
]
G4G27_09800 (rpoD)
Transcription machinery [BR:
spso03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
G4G27_09800 (rpoD)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QNA84246
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Position
2048301..2050331
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AA seq
676 aa
AA seq
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MAKTDMADGADTTENSDAPLIDLNDASIKKLVARAKKRGYITYEQLNEALPQDQMSSDQL
EDVMSALNEMGVNIVENDEAGEDGEDNEQAEDEVESVDTAEESAPALDVKKKEVIDRTDD
PVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFNAIIDWSNALNEGTM
QLREILDLDAMLSKDPAPESLSDDDDGSAGEISEKTAGPSFKEEEEPEESPAEEEEDSMQ
ERRTPRPSDDEEEDNTLSLAQMEEQLKPQALERFASITALYKKFSRVQQQRLEAMGAGGE
LSSADERKYHKLREDLTAEVESVQFHNAKIEYLVDQLYAFNRRLTALGGQMLRLAERHKV
PRKDFLDRYIGHELDEQWIAGLGKLDKKWTAFVENETDAVDRIRMEIAEISQATGMSLAE
FRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGRE
PTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQ
ANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRK
LKHPSRSRKMRSFLDQ
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagactgatatggcggacggcgctgacacgaccgaaaacagcgacgctccgctg
atcgacttgaacgacgcgtcgatcaagaagctggtcgcccgcgccaaaaagcgtggctac
atcacgtacgagcagctcaacgaagcgctgccgcaggaccagatgtcttccgatcagttg
gaagacgtcatgtccgcgctcaatgaaatgggcgtcaacatcgtcgagaatgacgaggcg
ggcgaagatggcgaagacaatgagcaggccgaggatgaggtcgaatcggtcgataccgcc
gaggaaagcgcccccgcgctcgacgtaaagaaaaaagaagtcatcgatcgtaccgacgat
ccggtgcgcatgtatttgcgcgagatgggcgcggtcgagctgctcagccgcgagggcgaa
atcgccatcgccaagcggatcgaggccggccgcgacacgatgatcctcgggctgtgcgaa
agcccgatcaccttcaacgcgatcatcgactggtcgaacgcgctgaacgaaggcacgatg
cagttgcgcgagatcctcgatctcgacgccatgctgtcgaaggatcccgcgcccgaatcg
ctcagcgacgacgatgatggttcagcgggcgaaatctccgaaaagaccgccggcccgtcc
ttcaaggaagaagaagagcccgaggaatccccggccgaagaggaagaggattcgatgcag
gagcggcgtacgccgcgtccgtccgatgacgaggaggaagacaacaccctctccctcgcg
cagatggaagagcagctgaaaccgcaggcgctggagcgtttcgcgagcatcaccgcgctg
tacaagaaattctcgcgcgtgcagcagcagcgccttgaagcgatgggtgccggcggcgaa
ttgtcgtccgcggacgagcgcaagtaccacaagctgcgtgaagacctcaccgcggaagtg
gagagcgtccagttccacaatgccaagatcgaatatctcgtcgatcagctctatgccttc
aaccggcgcctgaccgccctgggcggtcagatgctgcgcctcgccgagcgccacaaggtg
ccgcgcaaggatttcctcgaccgctatatcggccatgagttggacgagcagtggatcgcc
ggcctgggcaagctcgacaagaaatggactgccttcgtcgagaatgagaccgacgcggtc
gaccggattcgcatggagatcgctgagatcagccaggcgaccggcatgagcctcgctgag
ttccgccgcatcgtcaacatggtgcagaagggcgagcgcgaggcgcggatcgccaagaag
gaaatggtcgaggcgaacctgcgcctggtcatctcgatcgccaagaaatacaccaatcgc
gggctgcagttcctggatctgatccaggagggcaatattggcctgatgaaagcggtggat
aagttcgaatatcgccgcggctacaagttctcgacctatgcgacgtggtggatccgtcag
gcgatcacgcgttcgatcgccgatcaggcgcgcaccatccgtattccggtgcacatgatc
gaaacgatcaacaagctggtgcggaccagccgccagttcctccacgagcagggccgcgag
cccacgcccgaggaaatggctgagcgcctgtcgatgccgctcgaaaaggtccgcaaggtg
atgaagatcgccaaggagccgatctccctcgaaacgccgatcggcgacgaggaggattcg
catctcggcgatttcatcgaggacaagaacgcgatcattccggtcgatgcggcgatccag
gcgaacctcaaggaaaccgttacgcgggtcctggcgagcctgaccccgcgtgaggaacgc
gtgctgcgcatgcgcttcggcattggcatgaacaccgatcatacgctggaagaagtgggc
cagcagttcagcgtgacgcgcgagcgtattcgccagatcgaagccaaggcgctgcgcaaa
ctcaagcatccgagccgttcgcggaaaatgcgcagcttcctcgaccagtaa
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