Shewanella psychromarinicola: EGC80_01010
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Entry
EGC80_01010 CDS
T09848
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spsr
Shewanella psychromarinicola
Pathway
spsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGC80_01010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsr03019
]
EGC80_01010
Enzymes [BR:
spsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EGC80_01010
Messenger RNA biogenesis [BR:
spsr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EGC80_01010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
ERCC3_RAD25_C
CMS1
UvrD-helicase
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AZG33646
UniProt:
A0A3N4DQ07
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All DBs
Position
246725..248176
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AA seq
483 aa
AA seq
DB search
MSFSSLGLNAAILKAVEKQGYDTPTPIQAQAIPAVLAGQDVMAAAQTGTGKTAGFTLPIL
ELLSKGERAQRGQVRALVLTPTRELAAQVQESVATYGVNLPLKSAVVFGGVSIVPQLAAL
RNGVDILVATPGRLLDLCQQKALSFSKLEILVLDEADRMLDMGFIRDIKKVLSMLPAKRQ
NLMFSATFSNEIRELAKGLVNNPVEISVTPRNATAASVTQCVYPLDKTRKSMALIELIKT
NDWKQVLVFSRTKHGANRLAKSLDAANIKAAAIHGNKSQTARTKALADFKAGAVQVMVAT
DIAARGIDIDQLPCVVNFDLPNVPEDYVHRIGRTGRAGSTGQAVSLVGLEEVKLLHDIER
LTNRVIERKQLDGFEAPFTIPEPNLKSSGSSKSTQARKPNPNRSKHAQQHANDGAQGDKP
ARKFDSRQQSRGHDNNANPADPKAEARANGNKPPQRSRPPRRSGTAPVTSTSSNPYANAK
VKS
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcctcacttggtctgaatgctgctattttaaaagcggttgaaaaacaaggt
tacgacacccccactccaattcaagcacaagcaattccagccgttttagcgggccaagat
gtaatggcagcggcacaaactgggacaggaaaaacagctggttttaccctgccaatttta
gaattgttgtctaaaggtgaacgcgcgcaacgtggtcaagtccgtgcgctcgtgttaaca
ccaacacgtgaacttgcagcacaagtacaagaaagcgtcgccacttatggcgtcaactta
ccgttaaaatcagccgtggtatttggtggtgtgtctatcgtgccacaattagctgcgctc
agaaatggggtcgacattttagtcgccacccctggccgtttactcgacttatgccagcaa
aaagcccttagcttcagcaaattagaaattctcgtgttagatgaagcagaccgcatgcta
gacatgggctttattcgtgacattaaaaaagtattatcgatgttacctgctaagcgtcaa
aacctgatgttttcagcgactttttcgaatgaaattcgtgaactggctaaaggtttggtt
aacaatccggtagaaatttcagtaacgcctcgcaacgctaccgccgcctcggtgacacaa
tgtgtgtacccattggataaaacacgaaaatcaatggcactaatcgaactgattaaaacc
aatgattggaagcaagtattggtcttttcgcgcaccaaacatggcgccaaccgtttggcc
aagagtttagatgccgccaacattaaagctgcagcgattcatggtaataaaagccaaacc
gcacgcacaaaggctttggctgattttaaagctggcgcagtacaagtgatggtcgcaacc
gacattgccgctcgcggtatcgacatagatcaactgccatgtgttgtgaactttgacttg
cccaatgtacctgaagattatgtacatcgtattggccgtacaggccgtgcaggttcaaca
ggtcaagcggtatcattagttggcttagaagaagttaagttactgcatgatattgagcgc
ttaactaatcgcgtcattgagcgtaagcagcttgatggttttgaagcaccgttcacaatt
cctgaacctaacctcaaatcaagtggcagctcaaaaagcactcaagcgagaaagccaaac
ccgaaccgcagtaaacatgctcagcaacatgctaatgatggtgctcaaggtgataagcca
gcgcgtaagtttgactcacgccagcaatcacgtggccacgacaataacgctaaccctgct
gatcctaaggcagaagctagagccaatggtaataaaccaccacaacgttcacgtccgcca
cgtcgaagtggtactgcaccagtaacatcgacaagcagtaatccttatgccaatgctaaa
gtaaaaagctaa
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