Shewanella psychromarinicola: EGC80_02050
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Entry
EGC80_02050 CDS
T09848
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
spsr
Shewanella psychromarinicola
Pathway
spsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGC80_02050 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spsr03021
]
EGC80_02050 (rho)
03019 Messenger RNA biogenesis [BR:
spsr03019
]
EGC80_02050 (rho)
Transcription machinery [BR:
spsr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
EGC80_02050 (rho)
Messenger RNA biogenesis [BR:
spsr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EGC80_02050 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
NACHT
AAA
AAA_25
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AZG33829
UniProt:
A0A3N4DBL4
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All DBs
Position
491969..493231
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AA seq
420 aa
AA seq
DB search
MNLTELKDTPISDLVSLAESMNLENMARTRKQDIIFSILKAHAKSGEDIFGGGVLEILQD
GFGFLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDSIFGKIRPPKEGERYFALLKVSEVN
FDKPESSRHKILFENLTPLHAEERLRMERGNGSTEDITSRILDLCSPIGKGQRGLIVAPP
KAGKTLLLQSIAQSITYNNPDVVLMVLLIDERPEEVTEMQRMVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQELHLSRKAAEKRVFPAIDF
NRSGTRREEKLTTAEELQKMWILRKILHPMDEVSAMEFLIDKLAMTKTNEEFFTAMKRAK
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaacagaattaaaagacacgccaatttcggatctagtttctcttgctgaaagc
atgaatctggaaaatatggctcgtacccgtaaacaagatatcatcttctctattttgaaa
gctcacgccaaaagcggagaagacattttcggtggcggtgtattagaaatcctccaagac
ggatttggatttttaagaagttcagatggctcataccttgcgggtcctgacgatatttat
gtttcaccaagccaaattcgccgttttaacatgcgtactggtgacagtatttttggtaaa
atcagaccgccgaaagaaggcgaaagatactttgcacttttaaaagtcagtgaagtcaac
tttgataaaccagaaagctctcgccacaaaatcctgtttgaaaacttaaccccacttcat
gctgaagaacgtcttcgtatggaacgtggtaatggttcaacagaagacatcacctcgcgt
atccttgatctttgttcaccgataggcaaaggccaacgtggtttgattgttgcgccgcca
aaagccggtaaaacattattactgcaaagcattgctcaaagtattacttacaacaacccg
gatgtggtgttgatggtattactgattgacgaacgtcctgaagaagtgaccgaaatgcag
cgcatggttaaaggtgaagttattgcttcaacctttgatgagccagcaagtcgtcacgtt
caagttgctgaaatggttattgaaaaagccaagcgcttagttgagcacaaaaaagacgta
gtcattttattagactctatcacccgtctagctcgtgcatacaacaccgttatcccatca
tcaggtaaagtccttaccggtggtgttgatgccaacgcacttcaccgtccaaagcgtttc
ttcggtgctgcacgtaacattgaacacggtggcagtttaactattatcgctaccgcactt
gttgataccggttcgaaaatggacgaagtcatttacgaagaatttaaaggtacaggtaat
caagagttacacctttctcgtaaggcggcagaaaagcgtgtgttcccagcgattgatttc
aatcgttcaggtacacgtcgtgaagaaaaattaaccacagctgaagaacttcagaaaatg
tggattttacgcaaaattcttcatccaatggatgaggtatctgcaatggaattcttaatc
gataagttggctatgaccaaaacgaacgaagaattctttaccgcaatgaaacgcgcgaag
taa
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