Shewanella psychromarinicola: EGC80_03130
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Entry
EGC80_03130 CDS
T09848
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
spsr
Shewanella psychromarinicola
Brite
KEGG Orthology (KO) [BR:
spsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spsr03021
]
EGC80_03130 (rpoH)
Transcription machinery [BR:
spsr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EGC80_03130 (rpoH)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Fe_dep_repress
Sigma70_r1_2
UCR_14kD
Motif
Other DBs
NCBI-ProteinID:
AZG34023
UniProt:
A0A3N4E4M0
LinkDB
All DBs
Position
complement(743693..744550)
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AA seq
285 aa
AA seq
DB search
MTDQTQSMALTVPHSTSSLEAYIQSVTSINMLDADTEYGIAKRLQENGDLHAAKQLIMSH
LRFVVHVAKGYSGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIKAEIHEYV
LKNWRIVKVATTKAQRKLFFNIRKSKKRLGWFSDAEVTMVAENLGVSKADVTEMESRMAA
QDPAFDLASDSDDDHQDFAPALFLEDHSSDVASQVENANWEADSQTRLLSAIKTLDERSQ
HILRARWLDDHKVTLQELASTYQVSAERIRQLEKNAMNKLKSCIA
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcaaacgcaatcaatggcgctgactgttccacacagcactagcagtctagag
gcgtacatccagtctgtgaccagcattaacatgttggacgcggatacagagtatggcatc
gccaagcgtttacaagaaaacggcgatctacacgctgcaaaacaattaattatgtcgcat
cttcgttttgttgtgcatgttgcgaaaggctactctggatacggtttaccacaggcagac
cttattcaagaaggtaatattggcttgatgaaagcggttaaacgcttcgatcctgatgtt
ggtgttcgcttggtctcctttgcggtacattggattaaagctgaaattcatgaatacgta
ctgaaaaactggcgtatcgtgaaagtcgcgaccacaaaagcacagcgtaaattattcttt
aatatccggaagtctaaaaagcgtttaggttggtttagtgacgctgaagtgactatggtc
gcggagaatctgggtgtatctaaagctgacgtgactgagatggagtctcgcatggcagca
caagatccggcttttgatttagccagtgacagtgacgacgaccatcaagattttgcccca
gcattattcttagaagatcattcttcagatgtggcatcgcaggttgaaaatgccaattgg
gaagccgattctcaaacacgtttattatcagcaatcaaaaccttagatgaacgtagtcag
catatattacgtgcgcgttggttagatgatcataaagtgactttgcaagaactggcatcg
acttaccaagtctctgcggaacgtattcggcagttagaaaagaatgctatgaacaaactt
aaatcgtgtatagcgtaa
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