Shewanella psychromarinicola: EGC80_04405
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Entry
EGC80_04405 CDS
T09848
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
spsr
Shewanella psychromarinicola
Pathway
spsr03030
DNA replication
spsr03410
Base excision repair
spsr03420
Nucleotide excision repair
spsr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EGC80_04405 (polA)
03410 Base excision repair
EGC80_04405 (polA)
03420 Nucleotide excision repair
EGC80_04405 (polA)
03440 Homologous recombination
EGC80_04405 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spsr03032
]
EGC80_04405 (polA)
03400 DNA repair and recombination proteins [BR:
spsr03400
]
EGC80_04405 (polA)
Enzymes [BR:
spsr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
EGC80_04405 (polA)
DNA replication proteins [BR:
spsr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EGC80_04405 (polA)
DNA repair and recombination proteins [BR:
spsr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
EGC80_04405 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EGC80_04405 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
WH_GTF3C1_N
Motif
Other DBs
NCBI-ProteinID:
AZG34237
UniProt:
A0A3N4E2J9
LinkDB
All DBs
Position
1041353..1044109
Genome browser
AA seq
918 aa
AA seq
DB search
MPTIPNNPLILVDGSSYLYRAYYSPPHLTNSKGEATGAVYGVINMLRSLLSRYSPSHIAV
VFDAKGKTFRNDMYDEYKAQRPPMPDDLRTQIEPLHKIIHAMGLPLISISGVEADDVIGT
IALQASKEGRATLISTGDKDMAQLVNEHVTLINTMTDTIMGPEEVKTKYGVNPDRIIDFL
ALMGDKSDNIPGLPGVGEKTALAMLIGAGSVAQLLADPHSVVDMGFRGSKTMPAKIIDNA
DMLRLSYELATIKTDVKLEQDWHELNVKPQDRDELIKCFGEMEFKRWLAEVLDNKQPRGT
VSDASDEEIAVSPTIEAEYETILTMEALDKWIEQLNSADLIAIDTETTSLNYMEAELVGL
SFATEAGKAAYLPLAHDYLDAPQQIDKASALEKLRPILESDTLQKVGQNLKYDMSILANA
GITLKGVRFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEEVAGKGAKKLTFNQVNL
DIAGPYAAEDADITLRLHQHLWPRLEKEPELASVFNELELPLIQVLSDVERQGVLIDSML
LSQQSGELAKKLDELEIKAYEIAEEKFNLASPKQLQTLFFEKLGYPVKKKTPKGAPSTAE
EVLVELALDYPLPKIILEHRSLAKLKSTYTDKLPLMVNAITGRVHTSYHQANAATGRLSS
SEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLAAFAANK
DIHKATAAEVFGIHFEEVTTEQRRRAKAVNFGLIYGMSAFGLGKQLDIPRNEAQTYIDTY
FARYPGVLKYMEETRAIAAELGYVSTLFGRRLYLPEIRDRNALRRQAAERAAINAPMQGT
AADIIKKAMISIHHWINTSTQGEITLIMQVHDELVFEVDEAQAETLKTKVCDLMAQAASL
DVTLLAEAGIGDNWGEAH
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgccaacgattcccaataatccgctcatcctcgttgatggatcatcttatctttatcgc
gcttattattcgccgcctcatttaaccaattccaaaggtgaagcgacaggcgcggtttat
ggtgtcattaatatgcttcgcagtttattaagccgctacagcccaagtcatatcgcggtg
gtgtttgatgccaaaggcaaaaccttccgcaacgatatgtacgacgaatataaagcccag
cgtccaccgatgcctgatgatctgcgcactcaaatagaacccttgcacaaaatcattcac
gcgatgggtttaccactgatcagcatttcgggtgtcgaagccgacgatgtgatcggtacc
attgcgcttcaagcgagtaaagaaggccgagcgacgttaatcagtaccggcgataaagat
atggcgcaactcgtcaatgagcatgtgacgttaatcaataccatgacagacaccattatg
gggcccgaagaggtcaagacgaaatacggtgttaacccagatagaataatcgacttctta
gcactcatgggcgacaaatctgacaatattccgggcttacctggtgtcggcgaaaaaacc
gctttagccatgctcatcggagcaggcagtgttgcccagctattagccgatcctcacagt
gttgtcgacatgggttttcgaggctcgaaaaccatgccggctaaaattatcgacaatgcc
gatatgctaaggctgtcttacgagctagccaccatcaaaacagatgtcaaactcgaacaa
gactggcatgagctcaatgttaaaccacaagatcgagatgaactgattaaatgctttggt
gaaatggagttcaagcgttggttagctgaagtattagataacaagcaacctcgcggcact
gttagcgacgctagcgatgaagaaattgccgtatcgccaaccattgaagctgagtatgaa
acgattctgactatggaagcgctcgataaatggatcgaacagctcaacagcgccgacctt
attgcgattgatactgaaaccactagtctcaattacatggaagcagaacttgtcggttta
tcatttgctaccgaagcaggtaaagcggcctatttaccgttagctcatgattaccttgac
gcgccgcagcaaatcgataaagccagtgcacttgaaaagctgcgcccaattcttgaaagt
gacactctccaaaaagtcggtcaaaacctaaaatatgatatgagtattttagccaatgca
ggcattactctcaaaggtgtacgctttgataccatgctcgaatcctatgtgtttaattca
gtcgcatcacgtcacgacatggacggtttagcattaaaatatcttggtcataaaaatatt
agttttgaagaagtcgcaggtaaaggcgcaaaaaaactgacctttaaccaagttaattta
gatatagcaggcccttatgccgccgaagatgctgatattaccctgcgtttacatcaacat
ctatggccaagacttgaaaaagaacctgaactcgccagtgtatttaatgagttagaactg
ccattaattcaagtattgtcagacgtcgagcgccaaggtgtattaatcgactcaatgtta
cttagccagcaaagtggtgagttggccaaaaagcttgatgaactggaaattaaagcctac
gaaatagcagaagagaagtttaatttagcttcacccaagcagctgcaaacgctctttttt
gaaaaactaggttacccagtcaaaaagaaaacgcctaagggtgcaccatcaacagctgaa
gaagtgttagttgaactggcactagactaccctttacctaaaatcatccttgagcatcgc
agcctagcaaaactaaagagcacctataccgataaactgccgctaatggttaacgctatc
acgggtcgtgttcataccagttaccaccaagctaatgctgcgactggccgtttgtcatcg
agtgaacccaacttacagaatattcccattcgcaccgaagaaggtcgccgtattcgtcaa
gcctttatcgctcctgcgggtcgtaagattttagcagccgattattcgcaaattgaactg
cggatcatggcgcatttatcccaagatgcaggcttattagcggcttttgctgcaaacaaa
gatatccacaaagccactgcagctgaagtgtttggaatacattttgaagaagtgaccaca
gaacaacgtcgccgcgccaaagcggttaactttggcttaatttatggtatgtctgcattt
ggtttaggcaaacaactggatattccacgtaacgaagcacaaacgtatatcgacacttat
tttgctcgctacccaggtgtgcttaaatacatggaagaaacgcgagccatcgctgctgaa
ttgggttatgtgtcaacattattcggacgtcgtttatacttaccagaaatccgcgatcga
aacgcattacgtcgtcaagctgctgaacgcgcagcgattaatgcgcccatgcaaggtact
gccgcagatatcatcaaaaaagccatgatatcgattcaccattggatcaataccagcaca
caaggtgaaatcaccttaatcatgcaagtgcacgatgaattagtgtttgaggttgatgag
gcgcaagctgaaacgctcaaaacaaaagtgtgcgatttaatggctcaagcggcgtcattg
gacgtgaccttattagctgaggcaggcattggcgacaactggggtgaagcccactag
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