Shewanella psychromarinicola: EGC80_05770
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Entry
EGC80_05770 CDS
T09848
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spsr
Shewanella psychromarinicola
Pathway
spsr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spsr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EGC80_05770 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spsr03021
]
EGC80_05770 (rpoC)
03400 DNA repair and recombination proteins [BR:
spsr03400
]
EGC80_05770 (rpoC)
Enzymes [BR:
spsr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EGC80_05770 (rpoC)
Transcription machinery [BR:
spsr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EGC80_05770 (rpoC)
DNA repair and recombination proteins [BR:
spsr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EGC80_05770 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AZG34479
UniProt:
A0A3N4DLT7
LinkDB
All DBs
Position
1333890..1338116
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTTLERGQMLTEETYLDALEEYGDEFEAKM
GAEAVLELLRAINLEEQIEQMREELPSINSETRRKKVTKRLKLMEAFFTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREQAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERVNGRGEGMAFSDVSEVEKAYATG
VAELHARVKVRITETHIAEDGERTKATRIIDTTVGRALLSLILPEGLSYDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRFATISGASVGIDDMVIPDEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSIETVINRDGVPEQQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGIERGLTMKPLIEGGDVVEPLRERVL
GRVVALDVMKPGTEEVLAPRNTLLDEAWCNTLEEHSIDEVIVRSVITCDTDFGVCAACYG
RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNAGSLKL
HNAKHVSNIDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEDSEVAAGEIIANW
DPHTHPIISEVAGSVKFVDMIDGVTMTRQTDELTGLSSVVVLDVGARTSAGKELRPAIRL
VDANGNDLTIPGTEVPAQYFLPGNAIVSKDDNANINVGDPLARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGSEHYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCLISSAGDSDFLAGEQAEVSRVKIANRELVAQGKAPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDPLRGLKENVIVGRLIPAGTGYAYHKTRNEERAKVLSSR
GKVEATTVTASEAEQNLADLLNLAGSQD
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttcttaagcagcaaagtaagactgaagaatttaacggtatt
aaaattggtttggcctcgccagatctaatccgttcttggtcttttggtgaagtaaagaag
ccagaaaccattaactaccgtacattcaagcctgaacgcgaaggtttgttctgtgcgcgt
atctttggtccagttaaagattacgaatgtttgtgtggtaaatacaagcgtttgaagcat
cgtggtgtgatttgtgaaaagtgtggcgtagaagttacccagactaaagtgcgtcgtgag
cgcatgggtcacatagatctggctagtccagttgcccacatttggttcttaaaatcactt
ccgtcacgtatcggcttaatgctggacatgacgttgcgtgatattgaacgcgtactgtat
ttcgaatcatttgtggtgatcgagccgggcatgaccacgcttgagcgcggccaaatgcta
accgaagaaacatatcttgatgcgttagaagaatacggtgatgagtttgaagctaagatg
ggtgccgaagcagttcttgaattgctacgtgctatcaacttagaagaacagatcgagcaa
atgcgtgaagagttgccttcaatcaactcagaaacccgtcgcaagaaggtcactaagcgc
cttaaactgatggaagcatttttcacatctggtaacaaaccagagtggatgatcttaaaa
gtattaccggttcttccacctgatctacgtccattagtgccgttagatggtggtcgtttc
gcgacatcagatctgaacgatctatatcgtcgtgttatcaaccgtaacaaccgcttaaag
cgtctgttagatttagctgcgcctgacattatcgtacgtaatgaaaaacgtatgttacaa
gagtcagttgatgcgctattagataacggtcgtcgcggtcgtgctattaccggttctaac
aagcgtccgcttaaatctcttgctgatatgatcaagggtaagcaaggtcgtttccgtcag
aacttactcggtaagcgtgttgactattcaggccgttcggtaattaccgtaggtcctact
ttacgtctgcatcagtgtggtcttcctaagaagatggcgcttgaactattcaagccattc
atctacggcaagttagaaggtcgtggtttagcgactactattaaagctgctaagaaaatg
gttgaacgcgaacaggctgaagtatgggatgtgttagacgaagtgattcgtgaacatcca
gtcatgcttaaccgtgcacctacacttcacagactgggtattcaagcatttgaacctgta
ctgattgaaggtaaagcaattcaattgcatccgttagtttgtgcggcatacaacgccgac
ttcgacggtgaccaaatggcggttcacgtaccattaacgcttgaagctcagttagaagct
cgtgcgctaatgatgtcaaccaacaacattttgtcacctgctaacggtgagccagtaatt
actccgtctcaggacgttgtattaggtttgtactacaccagtcgtgagcgtgttaacggt
cgcggtgaaggcatggctttttctgatgtgtctgaagtagagaaagcttacgctactggc
gttgctgaattacatgctcgcgttaaagtgcgtattaccgaaacgcatattgcagaagat
ggcgaaagaactaaagcaactcgtatcattgatacaactgttggtcgtgctcttttatca
ttaattttgcctgaaggcttatcgtatgatttggttaaccaaaacatgggtaagaagcag
atctctaagttgttgaacacctgttatcgtcaattaggccttaaagataccgttatcttt
gctgaccaattgatgtataccggtttccgttttgcgaccatttctggtgcctctgttggt
atcgatgacatggttattccagacgagaaatacaccttagtagcagacgctgaagctgaa
gtgcttgaaattcaagagcagttccaatcaggtcttgttaccgccggtgagcgttacaac
aaagtaattgatatctgggcaagcgctaacgaaaaagtctcgaaagcgatgatggaaaac
ctgtcaattgagacagtgattaaccgtgatggtgttccagagcaacaagcatcgtttaac
agtatctatatgatggctgactcgggcgctcgtggtagtgcggctcagatccgtcagtta
gccggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaaccccaattgtg
gctaacttccgtgaaggtcttaacgtactacagtactttatttctactcacggtgcgcgt
aaaggtcttgccgataccgcattgaagacggcgaactcgggttacttaacccgtcgttta
gtagacgttgcacaagacttagtcgttattgaagatgactgtggtattgaacgtggtcta
acaatgaaaccgcttattgaaggtggtgatgttgttgaaccattacgcgaacgtgttcta
ggtcgcgtggttgctcttgacgtaatgaagcctggtacagaagaagtgcttgctccacgc
aacacactccttgatgaagcatggtgtaatacgttagaagaacacagtatcgatgaagtt
attgtacgttcagttattacctgtgatacagacttcggtgtgtgtgcagcgtgttacgga
cgtgacttggctcgtggtcatattattaaccacggtgaagcgattggtgttgtagctgcg
cagtcaattggtgaacctggtactcagttaaccatgcgtacgttccacatcggtggtgcg
gcatctcgagcttctgcagaaaacaacgttcaagttaagaacgcgggttctctgaagtta
cacaatgctaagcatgtttctaacatcgacggtaagctcgttatcgtatctcgttcttct
gaattagccatcatcgatgagctaggtcgtgagaaagagcgttataaagtgccttacggt
accgtattagagaaattggaagacagtgaagttgccgctggcgaaattatcgctaactgg
gatccacatactcacccaattatttctgaagtggctggtagtgttaaattcgttgatatg
attgacggtgtcaccatgacacgtcagacagatgaattaaccggtttatcttctgtcgtg
gtgctcgatgtcggtgcgcgtacttcagcaggtaaagaattacgtccagcaattcgctta
gttgatgcaaacggtaatgacttaacgatccctggtacagaagtaccagctcaatacttc
ttaccgggtaacgcgattgtgtcgaaagacgataacgcgaacatcaacgttggtgaccca
ttagcacgtattccacaagaatcgtctaaaacccgtgatatcaccggtggtcttccacgt
gttgctgacttattcgaagcgcgtaaaccaaaagagcctgccattcttgcagaaatctct
ggtacgatctcgttcggtaaggaaactaagggtaaacgtcgtctagtgatcactccagca
gatggtagtgaacattatgaagaaatgatccctaagtggcgtaacttaaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttattgcagacggtccagaagcggcacatgacatc
ttgcgtcttcgtggtattcacaacgtagctaactacattgtgaacgaagtacaggacgtt
taccgtctacagggcgttaagatcaacgataagcacatcgaagtgatcattcgtcaaatg
ctgcgtaagtgtttaatctcttcagcaggtgatagtgatttcctagcgggcgaacaagca
gaagtatcacgcgtgaagattgctaaccgtgagctagtcgctcaaggtaaagcacctgca
acgtttgagcgtgaattactcggtattaccaaagcttctttggcgactgaatcattcatc
tctgcagcctcgttccaggaaaccactcgtgtgttaactgaagcggccgttggtggcaag
agcgatccattacgtggtctgaaagaaaacgtaattgttggtcgtttgatcccagccggt
actggttatgcttatcacaaaacccgtaacgaagaacgtgctaaagtattaagttctcgt
ggcaaagtggaagctacaacagtaaccgcaagcgaagctgaacagaacctagcagaccta
ctaaacttggctggtagccaagattaa
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integrated database retrieval system
