Shewanella psychromarinicola: EGC80_06355
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Entry
EGC80_06355 CDS
T09848
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spsr
Shewanella psychromarinicola
Pathway
spsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGC80_06355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsr03019
]
EGC80_06355
03009 Ribosome biogenesis [BR:
spsr03009
]
EGC80_06355
Enzymes [BR:
spsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EGC80_06355
Messenger RNA biogenesis [BR:
spsr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EGC80_06355
Ribosome biogenesis [BR:
spsr03009
]
Prokaryotic type
rRNA helicases
EGC80_06355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AZG34580
UniProt:
A0A3N4DQL0
LinkDB
All DBs
Position
complement(1466564..1468378)
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AA seq
604 aa
AA seq
DB search
MSSEKTFRELGLSESLLRSLDDLGYENPTPIQAASIDPLMAGKDIIGQAQTGTGKTGAFA
LPLLNKIDMKINAPQILVLAPTRELAVQVAEAFGSYAKHMKGFHVLPIYGGQSMQQQLNA
LKRGPQVIVGTPGRVMDHMRRGTLKLDGLKALVLDEADEMLKMGFIDDIEWVLEHKPADS
QLALFSATMPEQIKRVAAKHLNNPVNISIASSQATVESIDQRYVQVSQHNKLEALVRVLE
VENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGKLDILIA
TDVAARGLDVERIGHVVNYDIPYDSEAYVHRIGRTGRAGRAGMAILFVTNREMRMLRTIE
RATNSRISPMKVPSPESVAERRLSRLGEQIQETINGDLDFMKNAVAELCQQLEVDTDLLA
AALLKQVQQERPLQLPTITERQRDSRDERGNDRNDRNSSDRPRRERSDRGERSSRPAPNS
FGDAEGLKDNPDVKMNRYVIDVGRENGVGVGNIVGAIANEANIDSRFIGQIQLFDQVTTV
DLPDGMPKDILSHLRKVRVCGRPLNIREAGDEVFADTTRGAGAPRRPRTDRARSDRPRKP
RDNG
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctgaaaaaactttccgcgaactcggcctgtctgagtctttgttgcgttcgctt
gacgacttaggttatgaaaacccaacgccaattcaagcggcgagtatcgacccgcttatg
gctggtaaagatattatcggtcaagcacaaaccggtaccggtaaaacaggtgcgtttgcc
ctgcctttactaaacaaaatcgacatgaaaatcaatgccccacagattttagtgttagca
ccaacccgtgaattagcggttcaagttgccgaagcatttggtagctacgctaaacacatg
aaaggcttccacgtactaccgatttacggtggtcaaagcatgcaacaacagttaaacgcc
cttaagcgtggaccacaagtgattgtcggtacaccaggtcgtgtaatggatcacatgcgc
cgtggcacattaaagctagatggcctaaaagccttagtattagatgaagccgacgaaatg
ctaaaaatgggctttatcgacgatatcgaatgggtattagagcacaagccagctgatagc
caacttgccttattctcggccactatgcctgagcaaattaagcgtgttgctgctaagcac
ttaaacaatccagtgaacatcagcatagcctcaagccaggcaactgttgagtctatcgat
cagcgttatgtgcaagtatcacagcacaacaaactagaagcgttagtacgtgtattagaa
gttgaaaatactgaaggtatcatcatcttcgttcgtactcgtaacagctgtgttgaatta
gctgaaaaattagaagcccgtggttatgcttcatcaccattacatggtgacatgaatcaa
caagctcgtgagcgtgctgttgagcagcttaagcgcggcaagttagacattttaatcgcg
acagatgttgcggcacgtggcctagacgttgaacgtattggacacgtagtaaactacgat
attccttatgattcagaagcatatgttcaccgcatcggtcgtaccggtcgtgctggtcgt
gctggtatggcgattttgtttgtgaccaatcgtgaaatgcgcatgttacgcactatcgaa
cgcgccactaacagccgtatttcgccaatgaaagtacctagcccagagtcagttgcagag
cgtcgtttatctcgtttaggtgagcaaatccaagagaccattaatggtgacttagatttc
atgaaaaatgccgttgctgaattatgccaacagcttgaagttgatactgatttattggct
gctgctttgttgaaacaagtacagcaagagcgccctctacaattaccgacaattacagag
cgtcagcgtgattcacgtgacgagcgcggaaacgatcgtaatgaccgtaatagcagcgac
cgtccacgtcgtgaacgcagtgaccgtggcgaacgtagtagccgtccagcaccaaatagt
tttggtgatgcagaaggcttaaaagataatccagacgtgaaaatgaatcgttatgttatc
gatgttggtcgtgaaaatggcgtaggtgtaggtaacatcgttggcgcgattgctaacgaa
gcgaacatcgatagccgtttcattggtcaaattcaattatttgatcaagtcacaaccgtt
gatttacctgacggaatgcctaaagacatcctttcacaccttagaaaagtgcgtgtttgt
ggtcgtcctttaaacattcgtgaagccggtgatgaagtctttgctgatacgactcgcggc
gcaggtgctccacgtcgtccgcgcacagatcgtgctcgcagtgatcgcccacgtaagcct
cgtgacaacggctaa
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