Shewanella psychromarinicola: EGC80_08075
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Entry
EGC80_08075 CDS
T09848
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spsr
Shewanella psychromarinicola
Pathway
spsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGC80_08075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsr03019
]
EGC80_08075
03016 Transfer RNA biogenesis [BR:
spsr03016
]
EGC80_08075
Enzymes [BR:
spsr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EGC80_08075
Messenger RNA biogenesis [BR:
spsr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EGC80_08075
Transfer RNA biogenesis [BR:
spsr03016
]
Prokaryotic type
tRNA degradation factors
EGC80_08075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
HTH_20
HTH_11
TFIIE_beta
ASFV_J13L
Motif
Other DBs
NCBI-ProteinID:
AZG34883
UniProt:
A0A3N4EWC8
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All DBs
Position
1864819..1867350
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AA seq
843 aa
AA seq
DB search
MINDPHFEREQDKYDNPIPSREYILEYLRAQKSPVTRDKIAEALTITEEVPLEALRRRLR
AMERDGQLVFTRGQSYGLPERMDLLSGTVLGHRDGFGFFKPDEGGDDLFINNRDMLMYFH
GDKVLAQKAGTDRRGRREARIVRLVHERTAALVGRYHVDSGMGFVIADDRRITQEILIAS
EDTFGARAGDVVVVELTRRPGRFVKAAAKVTEVLGKTMAPGMEIEIALRNYDLPHTWSEI
IEKKLKRIPDEVTEDDKLGRVDLRHLPLVTIDGEDARDFDDAVYAEAKPSGGWRLWVAIA
DVSHYVRTDSALDTEAHSRGNSVYFPSQVIPMLPEKISNGLCSLKPQVDRLCMVAEMTIS
AAGKLSGTKFYSAVMHSHARFTYTQVAAMLEGGAIAPEHEALFPHLLCLQSLYLTLDKRR
AERGAIAFETLETQFIFNEQRKIDKIVPRGRNQAHKIIEECMILANVASAKFVKKHKGEV
LYRVHEAPSAQKLANFKEFLAERGLSMDGGLEPTPTDYQNIMLKIADRPDFELIQVMLLR
SMRQAVYSPDNEGHFGLALEAYSHFTSPIRRYPDLVLHRVIKYLLAKEQGDVNDKWTRDG
GYLYQLEELDLLGEECSTTERRADEATRDVSDWLKCEYMQDHVGDTFDAVIASVTSFGLF
VRLNELFIDGLVHISSLASDYYKFDPMRQRLIGENTRQVYQVGDEVTVKVAAVNLDDRQI
DLLMVGDNSKGAGKPARKGSKPSTARERVNAEGAKSARGKSTGKSDKPKSDKPKSDKPKS
DKPKSDKPKSDKPKPSKRRSSGKASSPAAKPAVANNSSAVEQKADATKPNSSVKKNPAKR
SKR
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgatcaacgatcctcattttgagagagaacaagacaagtacgacaatcctattcctagc
cgtgagtatattttagaatacttgcgtgcacaaaagtctcctgttacccgcgataaaatt
gccgaagcattaaccattactgaagaagtgccattagaagcgcttcgtcgccgtttacgc
gcaatggaacgtgatgggcaattagtctttacccgcgggcaaagctatggcttacctgaa
cggatggatttattgtctggtacggttttaggccatcgcgatggatttggcttttttaag
ccagatgaaggcggtgatgacttatttattaataatcgcgatatgctgatgtatttccat
ggtgataaagtgctcgctcaaaaagcgggtaccgatcgtcgtggtcgccgtgaagcacgt
attgtccgactagtacatgagcgaaccgcagcgttagttggacgttatcacgtcgacagc
ggtatgggctttgtgattgcagatgaccgacgtattacccaagaaatattaatcgccagc
gaagatacgtttggcgctcgcgccggtgatgtggttgttgttgaattaactcgtcgtcca
ggtcgttttgttaaagcagcagcaaaagtgactgaagtcttgggtaagacaatggcaccg
ggtatggaaatcgaaattgcgttacgtaattatgatttaccccatacttggtctgagatt
attgagaaaaaacttaaacgtattcccgacgaagtcaccgaagacgataagttaggtcgc
gttgatttacgtcatttaccgttggtcaccattgatggcgaagatgcccgtgattttgac
gatgcggtatacgctgaagcaaaaccaagtggtggctggcgtttatgggttgcgattgct
gatgtgagccattatgtacgtactgattctgcattagatactgaggctcactcacgaggt
aactcagtatattttccgtcgcaagttattccaatgttgcctgagaaaatctctaacggc
ttgtgttcattaaagccccaggtcgatcgtttgtgcatggtggccgagatgaccatttct
gctgccggcaaattatcgggaaccaagttttattctgcagtaatgcactctcatgctcgt
tttacttacactcaagtggccgcgatgcttgaaggtggcgctattgcgcctgagcacgaa
gcgttattcccacatttattgtgtttgcagtcattatatctcaccttagataagcgtcgt
gcagagcgtggggcaattgcatttgaaaccctagaaacgcagtttatctttaatgagcag
cgtaaaattgacaaaatcgtcccaagaggtcgtaaccaagcgcataagatcatcgaagaa
tgtatgattttagccaacgtggcttcagctaagtttgttaaaaaacacaaaggcgaagtg
ctataccgtgttcatgaagctccatcggcgcaaaaactggctaattttaaagagtttctt
gctgaacgcggcttaagtatggatggtggactcgagccgacaccgacagactatcaaaat
atcatgctgaaaatagccgatcgccctgactttgagctaattcaagtgatgttattgcgc
tctatgcgtcaagcagtctatagcccagataacgaaggtcactttggtttggcattagaa
gcgtattcgcattttacctcgccaattcgccgttaccctgatttggttttgcatcgagtg
atcaaatatttgctcgcaaaagagcagggcgatgttaacgataagtggacgcgggatggg
ggttatctctaccaacttgaagaattagatttattaggtgaagaatgctctaccactgag
cgtcgcgctgatgaagcaactcgcgatgtcagtgattggctgaaatgtgaatatatgcaa
gatcatgtcggcgataccttcgatgcagttattgcctcagtcactagttttggattgttt
gtcagacttaacgaattatttattgatgggctggtgcatatttcaagcctggccagtgac
tactataaatttgatcctatgcgccaacgattaattggtgaaaatactcgccaagtatac
caagtgggtgatgaagtgaccgttaaagttgccgcggttaatcttgatgatcgtcaaatt
gacttgttgatggtgggtgacaacagtaaaggcgcgggtaaacctgcacgcaaaggcagc
aaaccttcaaccgctcgtgaacgagtgaatgcagaaggggctaaatcggcacggggtaaa
tcgacaggtaaatctgataaacctaagtcggataagcctaaatcggataagcctaaatct
gataaacctaagtcggataagcctaaatcggataagcctaaacccagcaagcgtcgttca
agtggaaaagcttcatcgccagcagccaaacctgcggttgctaacaactcttccgctgtg
gaacaaaaagctgatgccacaaaacccaattctagtgttaagaaaaaccctgccaagcgc
agcaagagatag
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