KEGG   Shewanella psychromarinicola: EGC80_08300
Entry
EGC80_08300       CDS       T09848                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
spsr  Shewanella psychromarinicola
Pathway
spsr02024  Quorum sensing
spsr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spsr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EGC80_08300
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    EGC80_08300
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spsr03019]
    EGC80_08300
   03036 Chromosome and associated proteins [BR:spsr03036]
    EGC80_08300
Messenger RNA biogenesis [BR:spsr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     EGC80_08300
Chromosome and associated proteins [BR:spsr03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    EGC80_08300
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AZG34922
UniProt: A0A3N4E903
LinkDB
Position
1912018..1912275
AA seq 85 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPARPFNVSAHQGTANGEESDVE
NT seq 258 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagacccatttttgaacgcattgcgtcgagagcgtgta
cccgtctctatctatttagtgaatggtatcaaattacaaggccaagttgagtcgtttgat
caatttgttatcttgttgaaaaatacggtaagccaaatggtttacaaacacgctatttca
acagtcgtaccagcacgcccatttaacgtttctgctcaccaaggtactgccaatggtgaa
gaaagtgatgttgaataa

DBGET integrated database retrieval system