Shewanella psychromarinicola: EGC80_08300
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Entry
EGC80_08300 CDS
T09848
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
spsr
Shewanella psychromarinicola
Pathway
spsr02024
Quorum sensing
spsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGC80_08300
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
EGC80_08300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsr03019
]
EGC80_08300
03036 Chromosome and associated proteins [BR:
spsr03036
]
EGC80_08300
Messenger RNA biogenesis [BR:
spsr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
EGC80_08300
Chromosome and associated proteins [BR:
spsr03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
EGC80_08300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
AZG34922
UniProt:
A0A3N4E903
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All DBs
Position
1912018..1912275
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AA seq
85 aa
AA seq
DB search
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPARPFNVSAHQGTANGEESDVE
NT seq
258 nt
NT seq
+upstream
nt +downstream
nt
atggctaaggggcaatctttacaagacccatttttgaacgcattgcgtcgagagcgtgta
cccgtctctatctatttagtgaatggtatcaaattacaaggccaagttgagtcgtttgat
caatttgttatcttgttgaaaaatacggtaagccaaatggtttacaaacacgctatttca
acagtcgtaccagcacgcccatttaacgtttctgctcaccaaggtactgccaatggtgaa
gaaagtgatgttgaataa
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