Shewanella psychromarinicola: EGC80_09105
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Entry
EGC80_09105 CDS
T09848
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
spsr
Shewanella psychromarinicola
Pathway
spsr03030
DNA replication
spsr03430
Mismatch repair
spsr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EGC80_09105 (holA)
03430 Mismatch repair
EGC80_09105 (holA)
03440 Homologous recombination
EGC80_09105 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spsr03032
]
EGC80_09105 (holA)
03400 DNA repair and recombination proteins [BR:
spsr03400
]
EGC80_09105 (holA)
Enzymes [BR:
spsr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
EGC80_09105 (holA)
DNA replication proteins [BR:
spsr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
EGC80_09105 (holA)
DNA repair and recombination proteins [BR:
spsr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
EGC80_09105 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
DUF4388
DUF6063
Motif
Other DBs
NCBI-ProteinID:
AZG35065
UniProt:
A0A3N4E877
LinkDB
All DBs
Position
complement(2099919..2100953)
Genome browser
AA seq
344 aa
AA seq
DB search
MRVYPDQLKQHLKQLPQCFLLFGDDPWLIENSKQLILNAAKKQGFEERVQLSQETGFNWG
DLIQEWQAMSLFASRRIIELTLPQGKPGIEGAAAFKTLLQHSNPDMLLIVQGPKASAEQT
NSKWFKSLDAKGIYLPCTTPEGKQFERWLDSRITHYALTVHHDAKAMLFSLFEGNLLAAE
QAMQLLQLLSPKQNITPEQLSEYFEDQSRFSVFQLCDAILGNHQKNAQHMLAQLKAEGTA
MPILMWALFKEINLLLTLKLAVQNGEQLSKLWGQHRIWDKRKPLYQAAITRLDLDHIEHM
LAFASTIELNLKQKGLEDWIGLSHLCILFDPRAHNRLAHIKLTD
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtttatcctgatcaactcaagcaacatctcaaacagctaccccagtgtttttta
ctgtttggtgatgacccatggctaatcgaaaacagtaaacaacttattcttaacgccgct
aaaaaacaaggttttgaagaacgggtgcaattaagccaagaaaccggctttaattggggc
gatttgatccaagaatggcaagcaatgagtttatttgctagccgacggattattgagtta
accctgccacaaggtaagccaggcatcgaaggcgcagcggcatttaaaacgcttttacaa
cattctaacccagatatgttgttgattgtacaaggacctaaagccagtgcagaacaaacc
aacagcaaatggtttaaatcactcgatgccaaaggtatatacttaccctgcaccacacct
gaaggtaagcagtttgaacgctggttagacagccgtattactcattatgctctcacggtt
catcatgatgcaaaagccatgttgtttagcttatttgaaggtaatttactggcagccgag
caagcgatgcaattgttgcaactgctcagccctaagcaaaatattaccccagaacaattg
agtgaatatttcgaagaccaatctcgttttagtgtgtttcaactctgtgatgccatttta
ggtaatcatcaaaaaaatgcccaacacatgttggctcaattgaaggctgaaggcaccgct
atgcccattttaatgtgggctttattcaaagaaattaacctactgctcaccttaaaactg
gcggttcagaatggcgaacaactcagtaaactgtggggacaacaccgaatttgggataag
cgaaaaccgctctatcaggctgcaataacgcgattggatttagaccatatcgaacatatg
ctcgcttttgcctctacaatagaattaaatcttaaacaaaaagggcttgaagattggatt
ggtcttagccatttatgcattttattcgatccacgagcacataatcgtttagcccatatt
aaattaacggactga
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