Shewanella psychromarinicola: EGC80_10830
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Entry
EGC80_10830 CDS
T09848
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
spsr
Shewanella psychromarinicola
Pathway
spsr00521
Streptomycin biosynthesis
spsr00523
Polyketide sugar unit biosynthesis
spsr00525
Acarbose and validamycin biosynthesis
spsr00541
Biosynthesis of various nucleotide sugars
spsr01100
Metabolic pathways
spsr01110
Biosynthesis of secondary metabolites
spsr01250
Biosynthesis of nucleotide sugars
Module
spsr_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
spsr00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
EGC80_10830 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
EGC80_10830 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
EGC80_10830 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
EGC80_10830 (rfbB)
00525 Acarbose and validamycin biosynthesis
EGC80_10830 (rfbB)
Enzymes [BR:
spsr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
EGC80_10830 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
Polysacc_synt_2
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
adh_short
KR
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
AZG35368
UniProt:
A0A3N4E7C9
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All DBs
Position
2471522..2472601
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AA seq
359 aa
AA seq
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MKILVTGGAGFIGSAVVRHIINSTQDNVINADKLTYAGNLESLASIASSDRYVFEQVDIC
DRAELDRVFKQHQPNAVMHLAAESHVDRSITGSSDFIQTNIVGTYMLLEATREYWNTLSS
DAKQAFRFHHISTDEVFGDLPHPDELQGHSPNEALALFTENTAYAPSSPYSASKASSDHL
VRAWLRTYGLPTVVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVE
DHARALYKVVTSGKVGETYNIGGHNEKQNLEVVQTICTILDALVPKDTPYAEQITYVTDR
PGHDRRYAVDASKISNELNWQPQETFETGLRKTIEWYLTNQDWCQHVQDGTYKGEPLGI
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattctagtcacaggtggcgctggttttatcggctctgcagtagtgcgccatatc
atcaatagcactcaagataacgtcattaatgctgataaactgacctatgcaggtaatctt
gaatcgttagcgagtatagcgtcaagtgatcgatatgttttcgagcaagtcgatatttgc
gatcgtgcggaattagaccgagtgtttaaacagcatcagccaaatgccgtaatgcacctc
gcagcagaatctcatgttgatcgctccatcactggttcatcagactttatccaaaccaat
atcgttggcacttatatgctgcttgaggcgacgagagagtattggaataccttgtcatct
gacgctaagcaagcatttcgctttcatcatatatctaccgatgaagtgttcggtgatttg
cctcacccagatgagttgcaaggccatagtccaaatgaagcgttagcattatttactgaa
aacactgcttatgcgccaagtagcccttattctgcatcaaaagcatcaagtgaccaccta
gtgagagcatggttacgcacctacggcttacctactgtggtgactaattgctctaacaac
tacggcccttatcactttcctgaaaaattgatcccattggtgatccttaatgcgctagaa
ggcaagccgcttcctatctacggtaaaggtgatcaaattcgtgattggctttacgttgag
gatcatgcccgcgcactttataaagtggtcaccagtggcaaagtcggtgagacctataat
attggtgggcataacgaaaagcagaatttagaagtggtacagactatttgcaccatctta
gatgctctagtgcctaaagacacgccttacgctgagcaaatcacttatgtgacagaccgc
cccggccatgatcgacgatatgccgttgatgcgagtaaaatcagtaatgaattgaactgg
caaccacaagaaacttttgaaacgggtttacgtaaaaccatcgagtggtatttaacgaat
caagattggtgtcaacatgtccaagatggaacttacaaaggcgagccgttaggcatttaa
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