Shewanella psychromarinicola: EGC80_12185
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Entry
EGC80_12185 CDS
T09848
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spsr
Shewanella psychromarinicola
Pathway
spsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGC80_12185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsr03019
]
EGC80_12185
Enzymes [BR:
spsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EGC80_12185
Messenger RNA biogenesis [BR:
spsr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EGC80_12185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AZG35578
UniProt:
A0A3N4DSS4
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All DBs
Position
2770937..2772223
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AA seq
428 aa
AA seq
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MTQASLVTTFAEFGLHTPLLARLAELNYIQPTPIQAETIPSTLTGKDLLAGANTGSGKTA
AFALPILHQLMNRRATSSAKGNFVSALVLVPTRELAKQVADSFKSYAVHLNGDIKVVAAF
GGVSVNTQMLALRGGADVVVATPGRLLDLVSSNALRLSQVSTLVLDEADRMLSLGFTEEL
TQVLNFLPKQKQTLLFSATFPDEVRQLTQALLVDPLEIQLQSAETSTLVQRVMTVNREKK
TALLAHLLQQHQWRQVLIFVSAKNSCNHLAEKLAKRGITAEVFHGDKAQGARSRVLDGFK
AGEIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEIGLALTLLSHD
EYHHFCVIEKKNKIRLEREQVNGFEADDVVPETVLEQPKPMAKPEGSGKKKRKKVASVNI
GIWAKKSD
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagcttctttagtcacgacttttgctgaatttggcctgcataccccattgttg
gcaagattagctgagcttaattatattcagcctacaccaatccaagctgaaaccattccc
agtacgctaaccggtaaagacttactggcgggtgcgaatacaggctcaggtaaaacagcg
gcttttgctctgccgattttacatcaattaatgaatcgtcgggcaacatcatctgctaaa
ggtaattttgtgagtgcattagtcttggtacccacacgggaattagccaagcaagttgct
gacagctttaaatcctatgcggttcatttaaatggtgacattaaagtggttgctgcattt
ggtggcgtatcggtcaacactcaaatgttagcattgcgtggcggcgcggatgtggtagtg
gcaaccccaggccgtttactcgatttagtctcttctaatgcactcaggttgtctcaagtg
tcaacgttggtgcttgatgaagctgaccgtatgctaagtcttggttttactgaagaattg
actcaagtactcaacttcctccctaagcaaaaacaaacgttattgttttcagcgactttt
cctgatgaagttcgtcaattaacgcaagcgttgttagtggacccacttgagatacaatta
caaagcgctgagacgagtaccttagtgcagcgtgtaatgacggttaaccgtgaaaaaaag
acggcattacttgcacacttgctacaacaacatcaatggcgccaagtattgatctttgtt
agtgccaaaaatagttgtaatcatttagctgaaaaattagctaaacgtggtatcactgca
gaagtctttcatggtgataaagcccaaggcgcgcgaagtcgggtattagacggttttaaa
gcgggtgagattcaagtactcattgcgacagacattgctgcccgtggtctcgatattgaa
aaattacctgtggtaattaattttgacttaccgcgcagcccagcagattatatgcatcga
attggtcgcagtggacgtgcgggagaaattggtttagcgttgaccttattgtctcatgac
gagtatcatcacttctgtgtaatcgagaagaaaaacaaaattcgccttgaacgtgaacaa
gttaacggatttgaggctgatgatgttgtgcctgaaaccgtactcgaacaacctaaacca
atggctaagccagaaggtagtggtaaaaaaaagcgcaaaaaagtagcctccgttaatatt
ggtatttgggctaagaaatctgattag
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