Shewanella psychromarinicola: EGC80_13650
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Entry
EGC80_13650 CDS
T09848
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
spsr
Shewanella psychromarinicola
Brite
KEGG Orthology (KO) [BR:
spsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsr03019
]
EGC80_13650 (hrpA)
Enzymes [BR:
spsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EGC80_13650 (hrpA)
Messenger RNA biogenesis [BR:
spsr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EGC80_13650 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
HA2_N
NACHT
ABC_tran
ResIII
PhoH
SLFN-g3_helicase
Transglut_core2
TsaE
DUF3810
Motif
Other DBs
NCBI-ProteinID:
AZG35819
UniProt:
A0A3N4DG45
LinkDB
All DBs
Position
3103884..3107759
Genome browser
AA seq
1291 aa
AA seq
DB search
MNSDLHPLSKAYLNLCYQTDAAKIRRRLYRVNKEAESEKKSQTLAQLTEAAQQAFAKAQQ
RLQSRPVIDYPDELPVSQKRDDIASAIANNQVVIVAGETGSGKTTQLPKICLELGLGTRG
LIGHTQPRRLAARSVANRIAEELNSPLGDVVGFKVRFADAMSDKSYIKLMTDGILLAELT
SDRFLNQYDAIIIDEAHERSLNIDFILGYLKQVLKKRPDLKVIITSATIDVDRFSKHFNN
APVIEVSGRTFEVETRYRPLVRDTDVDLDVSDGIFSAVDELMAAGPGDILIFMNGEREIR
DTADLLNKQQYRDTEVLPLYARLSYGEQSKVFKSHIGRRIVLATNVAETSLTVPGIRFVI
DPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYDEMDFIQRPEFT
DPEILRTNLASVILHMLSIGLGDIGGFPFIQPPDQKHIRDGFLLLEELQAVKKSGDDLIL
TPLGKDLAKIPLDPRLARMVIEANKLGCLHEALVITTGLSIQDPRERPTDKKQAADECHR
RYADKDSDFASWVKLWDHVKDQKNELSASQFRKQCRDEYLAYLRVREWQDLYTQVKQAVH
ELKWRINASAPSYEQLHRALLSGLLSHVGFKGENNEYLGARNRKFFVFPGSPLAKKGPKW
IMAAELTETSRLFARCCAKIDPEWLESLASHLVKKQYLEPHFEAKAASVIALENQILYGL
MIVNRRRVQYGPIDPIEAREIFIHSALAEGQLQTKEAFFVNNQKLLNDIEALEHKSRRRD
ILVDEQVLVDFYEPLIPPGIYNAPLFFAWWKTARQQTPDLLDYSQSLLMQRSADHISALD
FPEIWHKGNLALTVSYHFEPASVDDGVSVHIPVALINQIDDSDFDWLVPGLREEKLIALI
KSLPKNLRRNFVPAPDYARACYQAMKPFELSMLDTMCKQLLRMSGVRISADDFELTQLAE
HLKINFKIEDDQGRLVAQGRDLEALKGQLQGVVAKAIRKVADKGIEQHAITTWSFGDLPV
QYQQRKGNYEVKAYPALMDNKTDVSIKLFDDEHEAKRHHRVGLRRLLLINIPSPVKHLQQ
ALPNKAKLAMYFNPFGQVQILIEDIINAAVQQLLDQKQLDIRNEQQFEQAKDWVRQELNP
TAESIALNVEQILTIYQRIKKRLKGKISLDIAFAMSDIQTQLDSLVYKGFVDDCGWQRLT
DVGRYLKAIENRLEKLPVDPARDRLHMHSIAKVQQALTAQSAKVPRSQPVPEALIEARWM
IEEYRVSCFAQVLGTAYPISEKRVLNYINQV
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
ttgaattcggaccttcacccgctatctaaggcgtatctcaatctttgttatcaaaccgac
gcggctaaaattcgtcgtcgtttgtatcgagtcaataaagaagccgagtctgaaaaaaaa
tcccaaacgttagcgcagttgactgaagccgcgcagcaagccttcgcaaaagcgcaacag
cgcttacagtctagaccggttattgattatcccgatgagctgccagtttcacaaaaacga
gatgatattgcttctgccatagccaataaccaagtggtgattgtggcgggggagactggg
tcaggtaaaaccactcagttacctaaaatctgtcttgaactgggcttagggactcgaggc
ttaattggccatactcaaccgcgtcgtcttgctgcacgaagtgtcgcgaaccgtattgct
gaagaacttaatagcccattaggcgatgtcgttggctttaaagttcgttttgctgatgcc
atgagtgacaagagttacatcaaactgatgaccgacggtattttgctcgcggaactcacc
tcggaccgatttttaaaccagtacgatgcgattattattgatgaagcgcatgaacgaagc
ttaaacattgattttattttggggtatttgaaacaggtattaaaaaaacgtccagactta
aaagtcattattacttccgctaccatcgatgtagaccgtttttcaaaacattttaacaat
gcccctgttattgaagtgtctggacgtacctttgaagttgaaacgcgttatcgtccatta
gttcgtgataccgatgttgatttagatgtcagtgatgggatttttagtgccgttgatgag
ttgatggcagcaggacctggcgacatcttgatatttatgaacggcgagcgtgaaattcgt
gatactgctgatttactcaataaacaacagtatcgcgatactgaagttctacctttgtac
gctcgtctttcttacggtgaacagtctaaagtttttaaaagccatattggccgccgtatc
gtattagccaccaacgttgccgaaacctcattaaccgtgccagggatccgctttgttatc
gatcccggtaccgctcgcattagccgttatagttaccgtactaaagtgcaacgtctaccg
atagaacccatttcacaagccagtgcaaatcagcgtcaaggacgttgtggccgtgtcgga
cctggtatttgtattcgactttacgatgaaatggattttattcagcgccccgaatttacc
gatcctgaaattttgcgtaccaatcttgcctcggtcattttacatatgttgtcgattggg
ttgggcgatattggcggatttccatttattcagccaccggatcaaaaacacattcgagac
ggttttttattgcttgaagagttacaagcggttaaaaaatctggggatgacttaatctta
acgccattaggcaaagacttagccaaaattcccctcgatccgcgtttggctcgaatggtc
attgaagccaataaattgggatgtttacacgaagcattagtgattactaccggtttgtcg
atccaagatccgcgagaacgccccacagataagaaacaagcagcagacgagtgccatcgg
cgttatgccgataaagactctgattttgcaagttgggtgaagttatgggatcacgttaaa
gatcaaaaaaatgagttgtcagccagtcagtttagaaagcaatgccgtgatgaatatctc
gcgtatttacgcgtacgtgaatggcaagatctgtatacccaagtaaaacaagcagtacat
gaattgaaatggcgtattaatgcaagcgcgcccagttacgagcaattacatagagcatta
ttatcaggattgttaagccatgttggttttaaaggtgaaaataatgagtatttaggggcc
cgtaaccgtaaatttttcgttttccccggttcaccattagccaaaaaaggtcctaagtgg
attatggccgccgagctcacggaaacctcacgtttgtttgcccgttgctgcgccaaaatt
gatccagaatggttagaatcactcgcgtctcatttagtgaaaaagcagtatctcgagccc
cattttgaagcgaaagcggccagtgtgatcgcactcgaaaatcaaatactgtatggcttg
atgatagtcaacagacgtcgagtacaatatggccctattgacccgatagaagcccgagaa
atctttattcacagtgcattagcagaagggcagttacaaacgaaagaagccttttttgtt
aataatcaaaagctattgaatgacatagaagcgttagagcacaagtcacgtcgtagagat
attttagtcgacgaacaagtgctggtggatttttatgaacccttgatcccgccaggcatt
tataacgcgccgctattttttgcttggtggaaaacagcacgtcaacaaacacctgactta
cttgattacagccaatctttattaatgcagcgaagtgccgaccatatatctgcactcgac
ttcccagaaatatggcataaaggtaatttagccttaactgtcagttatcattttgagccg
gctagtgttgatgatggtgtatctgtgcatattcctgttgcactgattaatcaaattgat
gacagtgattttgattggctcgttccaggattacgagaagaaaagctgattgcattgatt
aagtcactgcctaaaaatctgcggcgtaactttgttcctgctccggactatgcccgggca
tgttatcaagcaatgaaaccgtttgagttatcgatgcttgatactatgtgtaaacaatta
ttgcgcatgagcggtgtcagaatttctgcagatgattttgagttaactcaactggcagaa
caccttaaaataaactttaaaattgaagacgatcaaggtcgtttagtcgctcaaggacgt
gatttagaagcgctaaaaggtcagttacaaggcgttgtggccaaagcgatccgtaaagtg
gcagataaaggcatcgagcaacatgcgataacaacatggtcatttggcgatttaccggtt
caatatcaacagcgaaaaggtaattacgaagtcaaagcgtatccggcattaatggataat
aaaaccgatgtgtcgattaagttatttgatgatgaacatgaagctaaacgccatcatcga
gtcggactgcgccgattattattgattaatatcccttcgccagtgaagcacttgcaacaa
gcattgcctaataaggccaagctggcgatgtactttaatccgtttgggcaagtgcagata
ttaattgaagatattattaatgctgctgtacagcagttgttagatcaaaaacaactcgac
attcgcaacgagcagcagtttgaacaagcaaaagattgggtccgccaagagcttaacccg
actgcagagtctattgcgctaaatgtagagcaaattttgacgatttatcaacgtattaaa
aaacgtttgaaaggtaaaattagcttggatatcgcgtttgcgatgagcgatattcaaact
caacttgatagcctcgtttataaaggctttgtggacgactgtggctggcaacggttaact
gatgtgggtcgttatctgaaagctattgaaaatagactagaaaagctgccagttgacccc
gcgcgcgatcgcttacacatgcacagcattgctaaagtacaacaggcattaacggcccaa
tcggccaaagtgccacgctcacaacccgttcctgaagccttgattgaagctcgctggatg
atagaagagtatcgggtatcatgttttgcacaggtgttaggcaccgcttatcccatttca
gaaaagcgtgtgttgaattatatcaatcaagtgtaa
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integrated database retrieval system
