Shewanella psychromarinicola: EGC80_13785
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Entry
EGC80_13785 CDS
T09848
Name
(GenBank) DEAD/DEAH box helicase
KO
K19789
DNA repair protein RadD
Organism
spsr
Shewanella psychromarinicola
Brite
KEGG Orthology (KO) [BR:
spsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spsr03400
]
EGC80_13785
DNA repair and recombination proteins [BR:
spsr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
EGC80_13785
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
DUF7577
AAA_16
AAA_30
SLFN-g3_helicase
AAA_22
AAA
zf-tcix
Zn_ribbon_3
DUF3638
DZR
T1R_D3-like
SNF2-rel_dom
TniB
Motif
Other DBs
NCBI-ProteinID:
AZG35839
UniProt:
A0A3N4DQA5
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All DBs
Position
complement(3131241..3132974)
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AA seq
577 aa
AA seq
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MPVKITLRDYQQHSVDAAIAHFKQSQQSAVLVLPTGAGKSIVIAELARIANGNVLVLTHV
KELVAQNAQKVGLLTQQANIYSAGLNQKKANGKTVVASVQSAARALTKFTQPFSLVIIDE
CHRVSNESTSQYQQLLTHLKARNPDIKLLGLTATPYRLGVGWIYRLHYHGKVGNTDTPVF
DKCIFELPMRPLINQGYLTKPIIFDGLSAQYDFSALAPHDSGEYPQIEIDSLLHHQGRAT
TAIIKQVKQLAELRKGVLIFAATVRHANEVMDLLDNDAALITAQTPHVERDDIIERFKAQ
QLKYIVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMIGRGLRLAPDKTDCLIIDYAAN
GYDLFYPEVGQVKPNSKSVPVQVHCPVCQFANTFWGIVDGDGDIVEHYGRRCQGLINDQQ
QCDFRFRSKSCPDCGAENDIAARICHSCQSTLIDPDKRLKQVLNAQHHHLFKCQQMLLHD
HDSKLLIQYIDIEGNDFKQTFSFETPAQRKAFYAVFVLSHTRTPGLRHPQYNKVVDVLAD
QTRFRKPDLLLLKKNKHRWDLVDSFFDYQGKYKIDMS
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttaaaatcactttacgtgattatcaacaacactccgtcgacgctgcaattgct
catttcaagcaaagccagcaatcagcggtgttggttcttcccactggcgcgggtaaaagt
atcgtgattgccgaattagcgcgtattgccaatggcaacgtactggtattaactcacgta
aaggaattagtcgctcaaaatgcacaaaaagtgggcttactcacacaacaagcaaatatt
tactctgctggattaaatcaaaaaaaagccaatggcaaaacggtggttgccagcgtccaa
tctgccgctcgggctttgacaaaatttacacaaccgttttcattagtcattatagatgag
tgccaccgagtcagtaacgagtcaactagccaatatcaacaactgctcacacaccttaaa
gcacgtaatcccgatatcaaactacttgggttaaccgccacgccttatcgccttggtgta
ggctggatttatcgactccactaccacgggaaagtgggcaatacagacacccccgttttt
gataaatgtatctttgaactcccaatgcggccattaattaaccaaggatacctcaccaaa
ccgattattttcgatgggctgagtgcccaatatgactttagcgcactagccccccatgac
agcggcgaatatccgcaaatagaaatagactccttgcttcatcatcaaggacgagcaacc
accgctattatcaaacaagtaaaacaacttgccgaactccgcaaaggagtgttgattttt
gctgccacagtcaggcatgccaatgaagtaatggatcttttagataatgatgccgcatta
attaccgctcaaacacctcatgtcgaacgtgatgacatcattgaacgctttaaggcccaa
caactcaagtacattgttaacgttgccgtgttaaccacaggcttcgatgcacctcatgtt
gaccttatcgccatattacgacctactgcttcagttagcttattccagcaaatgattggc
cgaggtttacgtttggcgccggataaaacagactgcttaatcattgattatgccgctaat
ggctatgatttattttatccagaagtcggtcaagtaaaacccaatagcaaatcagtacca
gttcaagtgcattgtcctgtgtgtcaatttgccaataccttttgggggattgttgatggc
gatggcgatattgtcgaacattatggcagacgctgccaaggattaatcaatgatcaacag
cagtgtgattttagatttagatcaaaatcctgtcctgactgtggggctgaaaacgatatt
gcagcacgtatttgccacagctgccaatcaaccttgatagatcctgataaacggttaaag
caggtccttaacgcacagcatcatcatttatttaaatgtcagcaaatgttgttgcacgac
cacgatagtaagttacttattcaatatattgatattgaaggtaatgattttaaacaaact
tttagctttgagacacctgcgcaacgtaaagctttttatgcggtgtttgttctcagtcat
actcgcactccaggcctgcgtcatcctcaatataacaaggtagtagatgtattggcggat
caaactcgatttagaaaacctgatttattattgttgaagaaaaataaacatcgctgggat
ttagtcgactcattttttgactatcaaggcaaatataaaatcgatatgagttaa
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