Shewanella psychromarinicola: EGC80_16785
Help
Entry
EGC80_16785 CDS
T09848
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
spsr
Shewanella psychromarinicola
Pathway
spsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGC80_16785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsr03019
]
EGC80_16785
03400 DNA repair and recombination proteins [BR:
spsr03400
]
EGC80_16785
Enzymes [BR:
spsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EGC80_16785
Messenger RNA biogenesis [BR:
spsr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EGC80_16785
DNA repair and recombination proteins [BR:
spsr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EGC80_16785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
SWI2_SNF2
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AZG36362
UniProt:
A0A3N4EZA9
LinkDB
All DBs
Position
complement(3850111..3852120)
Genome browser
AA seq
669 aa
AA seq
DB search
MTPLAHSETALTEATPAIFDHQTLHQLLQQQFGFTEFREGQQAVIETILGGHSALAIFPT
GSGKSLCYQFCAQQLPHLTLVISPLLALMKDQLAFLTSKGIAAASIDSSLTYEQTQQVMR
DVREQRTRILMVSVERFKNERFRQFLKSVPISLLVVDEAHCISEWGHNFRPDYLKIPQYC
QEFAIPQSLLLTATATEQVKLDMAKRFGLLPEQVVQTGFYRANLDLSVIAVSQLQKLNQL
THSVKEYTGSGIVYVTLQQTAEDVAAHLIRQGINAAAYHAGMDQTVRQHIQQHFMDNQIQ
VIVATIAFGMGIDKSDIRFVIHFDLPKSIENYSQEIGRAGRDGQLSHCVTLANLDGLNTV
ENFVYGDTPEAQNISQLLGIIASETEDGRWEVQETPLSSACNIRSLPLKTLFVQLELLGV
IRPSYAYFAEFKYRFVEDPQTILSRFNDQRQQFLSQVFAHTQFKKIWGQLDFDSLYQQHG
CERQRVVAALNYLAEQDLIILETKKITQVYDVQQQALSTPQQLQQLTQQLSEYFSDNEHK
EIVRISKLVNFFELDRCLSANLAQYFDDHSVPQICGHCSVCRGQIAVLSKQALAPIPDSA
TVTTLLEPLTILAQAKSLPTPTIATQAKFLAGMIMPMFSRLKVKQLDGFGRFSAYRYQDI
LDTVKKVNP
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgactcccttagcgcactccgaaaccgcactcacagaagcgacccctgcaattttcgat
catcaaacgctacatcaattgctacaacaacaatttggttttactgagttcagagaaggc
caacaagcggttatcgaaaccattttaggcggtcattcggcgttagcgatatttcctacc
ggttctggcaagtctttgtgttatcagttttgcgcccaacagttacctcatctcacctta
gtgatttcgccattattggcattaatgaaagatcagttagcttttttaaccagcaagggg
atcgcggccgccagtattgattcaagtttaacctatgagcaaacacaacaagtcatgcgc
gatgttcgtgaacagcgcactcggattttaatggtatcggttgagcgttttaaaaatgag
cgctttaggcaattccttaagtcagtacccatttctttgctggtggtcgatgaagcgcat
tgtatttctgaatgggggcacaatttcaggcccgactatttaaaaataccgcaatattgt
caagaatttgctatcccccaaagtttattgttaaccgcaacggcaacagaacaagtcaaa
ttggatatggccaagcgttttggtttattaccggaacaggtggtccaaactggtttttat
cgggcgaacttagatttatcagttattgcggtaagtcagctgcaaaaactcaatcaactc
acccatagcgtaaaagagtatactggtagcggtattgtatacgtgaccttacagcaaacg
gctgaagacgttgccgcacacttgatccgtcaagggatcaatgccgcagcttatcatgcg
gggatggatcaaactgtccgccagcatattcaacagcattttatggataatcaaatccaa
gtgatagtggcgaccattgcatttggtatgggcattgataaatcggatattcgatttgtt
atccattttgatttacctaagtcgattgaaaattacagccaggaaattggccgagcaggg
cgcgacggacaattatctcactgtgttacgctagctaatttagatgggttgaatacggtt
gaaaattttgtttatggtgatactcctgaagcacagaatattagccagttattaggtata
attgccagtgagactgaagatggtcgctgggaagtacaagaaacgccattgtcctccgcg
tgtaatattcgctcattgccgttgaagacgttatttgtacagttagagctactcggcgtg
atccgtccaagctatgcttattttgctgaatttaaatatcggtttgttgaagacccgcaa
accattctcagtcgatttaatgaccaacgccagcagtttcttagtcaggtgtttgcccat
acacagtttaaaaagatttggggacaactggattttgatagtttatatcaacaacatggt
tgtgagcgtcaacgagtcgttgcggcattaaattatttagctgagcaggatttgattatt
cttgagacaaaaaaaattactcaagtgtatgatgtacaacagcaggcgttatcgacaccg
caacaattacaacaacttactcagcaactcagtgagtattttagtgataatgaacataaa
gaaattgttcggattagtaagctagtcaatttttttgaacttgatcgttgtttaagtgca
aatttagctcagtattttgatgaccactcagtaccacaaatatgtggtcattgcagcgtt
tgtcgtgggcaaattgctgtattatcaaaacaagctttggctccgataccagactcggcc
acagtgacaacattgcttgaaccgttaaccatactggctcaggcaaaatcgctacccact
ccaaccattgctacgcaggctaaatttcttgctggtatgataatgccaatgtttagtcgt
ttgaaagtaaaacaattagatggctttggacgttttagtgcttatcgatatcaagatatt
ctggatactgttaagaaggtaaatccatga
DBGET
integrated database retrieval system
