Shewanella psychromarinicola: EGC80_19150
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Entry
EGC80_19150 CDS
T09848
Symbol
sbcD
Name
(GenBank) exonuclease subunit SbcD
KO
K03547
DNA repair protein SbcD/Mre11
Organism
spsr
Shewanella psychromarinicola
Brite
KEGG Orthology (KO) [BR:
spsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spsr03400
]
EGC80_19150 (sbcD)
DNA repair and recombination proteins [BR:
spsr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
EGC80_19150 (sbcD)
Archaeal homologous recombinant proteins
EGC80_19150 (sbcD)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
TetR_HI_0893_C
TPK_catalytic
Motif
Other DBs
NCBI-ProteinID:
AZG36766
UniProt:
A0A3N4EK49
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All DBs
Position
complement(4382573..4383916)
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AA seq
447 aa
AA seq
DB search
MRIIHTSDWHLGQYFYGKSRAAEHQAFMTWLLEQISLHQVDAIIVAGDIFDTGTPPSYAR
ALYNQFIVQIQQTGCQLILLGGNHDSVSTLNESKHLLACLNTIVIPGALEHFEEHVFALK
TRQGEIGAILCGLPFLRPRDVVLSESGESSMDKQRKLGDAISALYQRCFEQAKQLNSTFT
TQVPIVATGHLTTVGASTSESVRDIYIGSLDAFNAAHFPAADYIALGHIHRPQVVAKSAH
IRYSGSPIALSFDELSTNNTSNKSVFLVEFTDAQLSLVTPLMVPIFQPMQVLKGDLDSIE
QQINAFSSQTAATKTTWLSIEVSQQDYLSDLQSRIADMTQDKAVEVLQLKRARSQRQQHI
KKLDNETLSELSVEEVFARRLAQEQFDSDPQQAQLGRIKQRFSQIVAEVESERNTQETAA
SHVLQETMTHHGKTEVATKSATDGEQS
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcattcacacatcagattggcatcttggccaatatttttatggcaaaagccgc
gcagccgagcaccaagcctttatgacatggttacttgagcaaataagcctccatcaagtt
gatgccattattgttgctggcgatattttcgatactggcactccgccaagttatgccaga
gcactgtacaatcaatttattgttcaaattcaacaaacgggttgccagctgattttactg
ggcggtaatcacgattctgtttcgaccttgaatgaatctaaacatctactggcttgcctt
aatactatcgtgatccctggtgcattagaacattttgaagagcatgtatttgcacttaaa
acccgccaaggtgaaattggggctattttatgtgggttaccttttttacgcccacgtgat
gtagtgttaagtgaatctggtgagtcttcaatggataagcaacgcaaactgggtgatgcc
attagtgcgttatatcagcgttgttttgagcaagctaagcagctcaatagcacatttacc
acgcaggtacccattgtggcgacaggtcatttaaccacggtaggagccagcacttcagaa
tcagtacgtgatatctatattggcagtttagatgcctttaatgcggcacatttccccgcg
gcagactacattgcattaggccatattcatcgcccacaagtggtggcgaaatctgcgcat
attcgttacagcggctcaccgatagcattaagttttgatgaactatcgaccaataacacc
agtaataaatcagtgtttttggttgaatttactgatgctcaattatccctcgtcacgcca
ttaatggtgcctatttttcagcccatgcaggtgctaaaaggtgatttagatagcattgag
cagcagataaatgcattttcttctcaaacagccgcgacaaaaaccacttggttaagcatt
gaagtatcgcagcaagactatttgtctgatctacagtctcgtattgctgacatgactcaa
gacaaggcggttgaggtattgcaattaaagcgtgcccgtagtcaacgacagcaacacatt
aaaaagcttgataatgaaaccttatccgagttgagtgtcgaggaagtgtttgcgcgccgt
ttagcccaagagcaatttgacagcgatccccaacaggcacaattaggccgaattaagcag
cgctttagccaaatagttgccgaggtggagtcagagcgaaacacccaagaaaccgccgcg
agccatgttctgcaagaaacgatgacccatcatggtaaaacagaggttgcaacaaaaagt
gctacagacggtgaacagtcatga
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