Shewanella psychromarinicola: EGC80_21190
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Entry
EGC80_21190 CDS
T09848
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
spsr
Shewanella psychromarinicola
Brite
KEGG Orthology (KO) [BR:
spsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spsr03009
]
EGC80_21190 (rlmD)
Enzymes [BR:
spsr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EGC80_21190 (rlmD)
Ribosome biogenesis [BR:
spsr03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EGC80_21190 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
TRM5-TYW2_MTfase
Methyltransf_11
PCMT
MTS
Cons_hypoth95
Methyltransf_23
Methyltransf_15
Methyltransf_12
RrnaAD
Methyltr_RsmB-F
Ubie_methyltran
Methyltransf_4
CMAS
Motif
Other DBs
NCBI-ProteinID:
AZG37130
UniProt:
A0A3N4E9W2
LinkDB
All DBs
Position
complement(4874086..4875453)
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AA seq
455 aa
AA seq
DB search
MAQFFQAKPNKSKQLSAKLSLSVTQLDHLGAGIAQHQGKIVFIPGVLPGETATVQFVEQK
KSYAKAKLIAIDVASAHRITPHCPHYHQCGGCDLQHMDTNVQRDHKQTSLVDLISKLSSA
KTIEADIIAEPLVGEAWHYRRRARLATLFDKNSQRLQLGFRAANSNKIVSIQQCPVLAES
LSALITPLAVNLNQLKAKASLGHVELTQADNGNFAVLRVTKVLPASDIRWLTGFAEKHQL
NLLLQDDAGQLTQLYPLSQANDDVVALPYYHLAQESVRCSFTPGNFVQVNGAINQAMVDQ
AIEWLAPQAGERILDLFCGVGNFSLPLARRAAEVIGVEGVPEMVQQAKQNAIDNQLDNVT
FHHADLSADLSTQTWLGKIDKLLLDPARAGAFESLQWLQKMQPKKVVYVSCNPASLARDS
SVLLANGYRIAQVGLVDMFPQTHHIEAMVLFELDK
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atggcacaatttttccaagcaaaaccgaacaaatctaagcaattatcagcaaagctcagc
ctcagcgtgactcaacttgaccatttaggtgcgggcatagcgcaacatcaaggtaaaatt
gtgtttattcctggtgtgctgccaggagagacggccacagtacaatttgtggaacaaaag
aaaagctatgctaaggccaagttaattgctattgatgtggcatctgctcatcgaatcacc
cctcattgtcctcattatcatcaatgcggcggctgtgatttacagcatatggacactaat
gtgcaacgcgatcataagcaaactagtttagttgatctcatcagcaagctgtccagtgct
aaaaccattgaagccgatatcatcgcagaacctttagtgggagaggcgtggcattaccgt
cgacgtgccagattggcaacattattcgataaaaattctcagcggctacaacttggattt
cgtgcagcaaatagcaataaaattgtctctattcagcagtgccctgtattagcagagtct
ttatccgcgttaattaccccattggcggttaatttaaatcaactcaaagctaaggctagt
ttagggcatgttgaacttacccaagccgataacggtaattttgccgtattaagagtcacc
aaagtcttgccagcatccgatattcgttggttaacgggctttgctgaaaaacatcaactt
aacttattattgcaagatgatgctggtcaattgacgcaattgtatccgttgtcacaagcc
aatgatgatgtagtcgcgttaccttattatcatcttgcacaggaatcggttcgctgctcg
ttcacgccaggcaattttgttcaggttaatggtgctattaatcaggccatggtggatcaa
gccattgagtggttagcccctcaggctggtgagcgtattctagacttgttttgtggtgtg
ggtaatttcagtttacccttggctcgacgagctgcagaggttataggtgttgaaggtgta
cctgaaatggtgcaacaagctaaacaaaatgctattgataaccagttagataatgtcacc
tttcatcatgctgatttgagtgccgatttatcgacacaaacctggttaggcaaaattgat
aagctgttgcttgatcctgctcgagcaggagcctttgaaagtttacaatggttacagaaa
atgcaacctaaaaaagtggtctatgtttcatgtaatccagcaagtttagcccgcgacagt
agtgtattattagccaatggttatcgtattgcccaagtgggtttagttgatatgttcccg
cagacacaccatattgaagcgatggtgttatttgaattagataaataa
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