Shewanella psychromarinicola: EGC80_21470
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Entry
EGC80_21470 CDS
T09848
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spsr
Shewanella psychromarinicola
Pathway
spsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGC80_21470 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsr03019
]
EGC80_21470 (pnp)
03016 Transfer RNA biogenesis [BR:
spsr03016
]
EGC80_21470 (pnp)
Enzymes [BR:
spsr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
EGC80_21470 (pnp)
Messenger RNA biogenesis [BR:
spsr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EGC80_21470 (pnp)
Transfer RNA biogenesis [BR:
spsr03016
]
Prokaryotic type
tRNA degradation factors
EGC80_21470 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
OB_PDCD11
KH-I_KHDC4-BBP
S1_2
Motif
Other DBs
NCBI-ProteinID:
AZG37179
UniProt:
A0A3N4F1Z4
LinkDB
All DBs
Position
complement(4942142..4944238)
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AA seq
698 aa
AA seq
DB search
MNPIVKSFEYGQHTVTLETGVMARQADAAVLASMGDTTVLVTVVGKKIADLSRSFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD
PQIEPDIISMIGTSAALAISGIPFSGPIGAARVGYVDGEYVLNPSVDLLATSSLNLVVSG
TKAAVLMVESEAKALAEEIMLGAVTYGHDQQQVVVDAISEFKAEAGKPTWDWTAPVQDQD
LVAKIKELAEAGMTDAYQIEVKQDRYIQVGIVKAAAKAALVAENPEVDCREVDTLLGSLE
KSVVRGRIISGKPRIDGREPDMIRALSVLAGVLPRTHGSSLFTRGETQALVTCTLGTERD
AQKIDSIMGERTNRFMLHYNFPPYCVGETGMVGSPKRREIGHGKLAWRGMNAVMPSAEEF
PYSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAI
GSPRDDISAHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELDDNGTVKIASSN
GEATKEAIRRIEEITAEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN
VSDHLEMNQEVAVKVMEVDRQGRVRLSIKEAQAKETAE
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccaattgtaaagagttttgagtatggtcaacataccgtcaccttagaaacaggt
gttatggcacgtcaagcagatgctgcagttttagcaagcatgggcgataccacagtatta
gttactgtcgttggtaaaaaaattgcggacttaagccgtagctttttcccgctaacggtt
aactatcaagaaaaaacctatgctgcaggtaaaattcctggcggtttctttaagcgtgaa
ggtcgtccttcagaagatgaaactctgattgcacgtctcattgaccgtcctattcgtcct
ttatttcctaacggttttaaaaacgaagttcaagttatcattactgtggtatcggttgat
ccacaaatcgagccagatattatttcgatgattggtacctcagccgcgttagctatttct
ggtattcctttcagtggcccaataggtgctgcgcgtgttggttatgtcgacggcgaatat
gtacttaacccatcggttgatctgcttgcaacaagctcgcttaacttagtggtttccggt
actaaagccgcggtacttatggttgaatctgaagcaaaagcgcttgcagaagaaatcatg
ctaggtgcggtaacttacggtcatgatcaacagcaagttgttgttgatgctatcagcgaa
ttcaaagctgaagcgggtaagccaacatgggattggactgcacccgttcaagatcaagat
ttagtcgctaaaatcaaagagcttgcagaagctggcatgacagacgcttaccaaattgaa
gtcaagcaagaccgttatatacaagtcggtattgttaaagcggctgcgaaagcggcgtta
gttgcagagaatccagaggtagattgtcgtgaagtcgacaccctacttggtagcttagag
aaaagtgtggtccgcggacgtattattagtggtaagccacgtatcgatggtcgcgaacca
gacatgatccgcgcattaagtgtgttagcgggtgtacttccacgtactcacggtagctca
ttgtttactcgtggtgaaacacaagcactagtcacttgtactttgggtactgaacgtgat
gctcagaagattgatagcatcatgggcgaacgtactaatcgctttatgcttcattataac
ttccctccgtattgtgttggtgaaaccggtatggttggttcacctaagcgtcgtgaaatt
ggtcatggtaagttagcatggcgtggtatgaatgcagtgatgccttctgctgaagaattc
ccatacagcattcgtgttgtatctgaaatcactgaatctaacggttcaagctcaatggct
tcagtatgtggtacttcattagcattaatggatgcgggtgtaccaatcaaaagttctgtt
gctggtattgcaatgggtctcgttaaagaaggcgacgatttcgttgtactttctgacatc
ttaggtgatgaagatcacttaggtgacatggactttaaagtagccggtactcgtgatggt
atcactgcattgcagatggatatcaaaatcgaaggtatcaccaaagaaatcatggatatc
gcactacaacaggcttatggcgcacgcgttcatatcctaaacgtgatggaccaagccatt
ggttctcctcgtgatgatatctctgcccatgctcctcgtatcaccactatcaagatcaac
ccagagaagatccgtgatgtaattggtaaaggcggcgcggtaattcgtgcgctaaccgaa
gaaacgggtactacgattgagcttgatgacaatggtactgtgaaaatagcatcatcgaat
ggcgaagcaacgaaagaagctatccgtcgtatcgaagaaatcactgctgaagttgaagtg
ggtcgcatctacaacggtaaagtaatccgtattgttgatttcggtgcatttgtaaacatt
cttccaggtaaagatggtttagtacacatctctcaaatcagtgatgagcgcgtcgcaaat
gtatctgatcatttagaaatgaaccaagaagttgctgtaaaagtaatggaagtggatcgt
caaggtcgtgtcagactgtcaattaaagaagctcaagcgaaagaaactgctgagtaa
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