Streptococcus pseudoporcinus: NCTC13786_00416
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Entry
NCTC13786_00416 CDS
T07156
Symbol
rnjB
Name
(GenBank) metallo-beta-lactamase superfamily protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
spsu
Streptococcus pseudoporcinus
Pathway
spsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13786_00416 (rnjB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsu03019
]
NCTC13786_00416 (rnjB)
Messenger RNA biogenesis [BR:
spsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC13786_00416 (rnjB)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
VEF93135
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Position
1:complement(420246..421907)
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AA seq
553 aa
AA seq
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MSDIKIIALGGVREYGKNFYLVEINDSIFILDAGLKYPENEQLGVDLVIPNLDYLIENKD
KVQGVFLSHGHADAIGALPYLLAEVPVPVFGSELTIELAKLFVKSNNATKKFNNFHIVDS
ETEIEFRDGLVSFFSTTHSIPETLGMVIGTDRGNIVYTGDFKFDQAAREGYQTDLARLAE
IGKEGVLALLSASANATSVVQTASETEVGDEMNQVIGDAEGRVIIAAVASNLVRIQQVFD
SAAASGRRVVLTGSDVENVVRTAIRLKKLRLTDEKLLIKPKEMSQYEDQELIILEAGRMG
EPIVSLQKMAIGRHRFANIKKGDLVYIVTTPNVAKEAMVARVENLIYKAGGSVKLITQNL
CVSGHANGRDLQLMLNLIKPKYLFPIQGEYRDLAAHAELAEEIGLFPENIYIVKRGDIMV
LNQEGFLHEGAIPASDVMIDGNAIGDVGNIVLRDRKVLSEDGIFIVVITVNKREKKIISK
AKVNTRGFVYVKKSRDILRESAELVNTTVGNYLQQDNFDWGELKGSVRDELSKFLFEQTK
RRPAILPVVMEVR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatataaaaattatcgccttgggaggagttcgtgaatatggaaagaacttctac
ttggtagaaataaatgattcgatttttatcttagatgctggtttaaaatacccagagaac
gagcaattaggagtagatcttgttatccctaatttggattaccttattgaaaacaaagat
aaggtacaaggtgtattcctaagccacggccatgccgacgctattggggccttgccttac
ctgttagcagaagttcctgtgcctgtttttggctctgagttaaccattgaattagctaaa
ctatttgtcaaaagcaataatgcgactaagaaatttaacaatttccacattgtcgatagt
gaaaccgagattgaattccgagatggcttggtttctttctttagcactacccattcaatc
ccagaaactctgggtatggttatcggtacagaccgtggaaacattgtctatacaggtgat
tttaaatttgaccaggctgcacgtgaaggttaccaaacggacctagctcgtttggccgag
attggtaaagagggtgttcttgctttactatcagcatctgccaatgccacttcggttgtg
caaacagccagtgaaactgaagttggtgatgagatgaaccaggtcataggcgacgcagaa
ggtcgtgtgattattgcggcagtcgcttcaaatttagtccggatccagcaggtttttgac
tcagcagcagcttcgggcagacgcgtggttttgactggtagtgatgtagaaaatgttgtg
cgcacggctatccgtctgaaaaaattaaggctgactgacgaaaaattgttaatcaagcca
aaagaaatgtctcaatatgaagaccaggaattaattattcttgaagcgggccgaatgggt
gagcctattgtgtccttgcaaaaaatggcaataggccgtcatcgttttgcaaatatcaaa
aaaggtgacctggtctacatcgtaacgacaccaaatgttgccaaagaggctatggttgcg
cgtgttgaaaatcttatttataaagcaggcgggtcagtcaagctgattacccaaaatcta
tgcgtttcaggccatgctaatggccgtgatttgcagttaatgcttaacttaatcaagccc
aagtatctgttcccgattcagggtgaataccgtgatttagcagcccatgctgagttagct
gaggagataggccttttcccagaaaatatctacattgttaaacgtggtgatattatggtc
ctcaatcaagaaggcttcctgcatgaaggtgcgattcccgctagtgacgtcatgattgac
gggaatgctatcggagatgttggcaatatcgttcttcgtgaccgcaaagtcttatcagaa
gatgggatctttatcgttgtcatcactgttaataagcgtgaaaagaaaattatttcaaaa
gctaaggtcaatacacgtggctttgtttacgtcaaaaagagccgtgatatcttgcgagaa
agtgcagaattagtcaacaccacagttggcaattacttgcaacaagacaattttgattgg
ggagaacttaagggctctgtccgtgacgaactgtcgaaattcttatttgaacaaaccaaa
cgtcgtccagctattcttccagtagtcatggaggtccgttaa
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