Streptococcus pseudoporcinus: NCTC13786_01067
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Entry
NCTC13786_01067 CDS
T07156
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spsu
Streptococcus pseudoporcinus
Pathway
spsu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spsu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC13786_01067 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spsu03021
]
NCTC13786_01067 (rpoC)
03400 DNA repair and recombination proteins [BR:
spsu03400
]
NCTC13786_01067 (rpoC)
Enzymes [BR:
spsu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC13786_01067 (rpoC)
Transcription machinery [BR:
spsu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC13786_01067 (rpoC)
DNA repair and recombination proteins [BR:
spsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC13786_01067 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
VEF93757
LinkDB
All DBs
Position
1:complement(1121927..1125589)
Genome browser
AA seq
1220 aa
AA seq
DB search
MIKRRKVILVVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVI
FGPTKDWECACGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIP
SRMGLTLDMSPRALEEVIYFAAYVVIDPMDTPLEPKSLLTEREYREKVQEYGYGSFIAKM
GAEAIQDLLKRVDLPAEIAELKEELKTATGQKRIKAVRRLDVLDAFNKSGNKPEWMVLNI
LPVIPPDLRPMVQLDGGRFAASDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQE
AVDALIDNGRRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTL
KMYQCGVPREMAIELFKPFVMREIVAKEYAGNVKAAKRMVERGDERIWDILEEVIKEHPV
LLNRAPTLHRLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEAR
LLMLAAEHILNPKDGKPVVTPSQDMVLGNYYLTMEDAGREGEGRVFKDIDEAVMAYQNGY
AHLHSRVGIAVDSMPNKPWKDSQRHKIMVTTVGKILFNAIMPEDLPYLQEPNNANLTEGT
PDKYFLEPGQDIQSLIDGLEINVPFKKKNLGNIIAETFKRFRTTETSAFLDRLKDLGYYH
STLAGLTVGIADIPVIDNKAEIIEAAHHRVEDINKAFRRGLMTEDDRYVAVTTTWREAKE
ALEKRLIETQDPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREG
LTVLEMFFSTHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLVIRAIT
DGKEVTETLEERLQGRYTRKSVKHPETGEVLIGADQLISEDMARKIVEAGVEEVTIRSVF
TCSTRHGVCRHCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDI
TQGLPRIQEIFEARNPKGEAVITEVKGKVVDIEEDASTRTKKVYVEGKTGKGEYVVPFTA
RMKVEIGDEVNRGASLTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGDKHVE
VMVRQMLRKVRVMDPGDTDLLPGTLMDIADFTEANKEIVISGGIPATSRPVLMGITKASL
ETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNIEPQAI
NEVEIIEEAEVAEEVTATEE
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgataaaacgaagaaaggtaatactagtggttgacgtaaatcgttttaaaagtatgcaa
atcacattagcctcaccaagtaaagtccgttcatggtcttatggtgaagttaaaaaacct
gaaactatcaactaccgtacattaaagcctgaacgtgaaggtctctttgatgaagtcatc
tttggaccaacaaaagattgggaatgtgcgtgtggaaaatacaaacgaattcgctataaa
ggaattgtttgtgaccgttgtggtgttgaagtaacccgtgccaaagttcgtcgtgaacgt
atgggacacatcgagttaaaagctcctgtatcacatatttggtatttcaaaggaattcca
tcacgtatgggtctgacactagatatgagtcctagagcacttgaagaagttatctatttt
gcagcctatgttgtcattgacccgatggataccccccttgaacctaaatcactcttgaca
gaacgcgaataccgtgaaaaagttcaagaatacggttacggttcatttatcgcaaaaatg
ggtgcagaagccattcaagatctcttgaaacgtgtggatctgccagcagaaattgctgag
ttaaaagaagaactcaaaacagcaactgggcaaaaacggattaaagcagttcgtcgttta
gacgttcttgacgccttcaataaatctggcaataaacctgaatggatggtccttaacatc
ttaccagttatcccaccagatttgcgtccgatggttcaattggacggtggccgttttgca
gcctctgacttaaatgacttgtaccgccgtgtgattaaccgtaacaaccggcttgcgcgt
ttattggaattgaacgcacctggaatcatcgttcaaaatgaaaaacggatgcttcaagaa
gcagtcgatgccttgattgacaatggtcgtcgtggtcgtccaattactggacctggtagt
cgtccattgaaatctttaagccacatgcttaaagggaaacaaggacgtttccgtcaaaac
ttgcttggtaagcgggttgatttctctggtcgttctgttatcgccgttggtcctactctt
aaaatgtaccaatgtggtgtaccacgtgaaatggccattgagcttttcaaaccatttgtt
atgcgcgaaattgttgccaaagaatacgccggcaacgtgaaagcagctaagcgtatggtt
gagcgtggtgacgaacgtatttgggatattttagaagaagttatcaaagaacacccagta
cttcttaaccgcgcaccgaccctccacagacttggtatccaagcttttgaaccagtatta
attgatggtaaagctctccgtcttcacccgctggtctgtgaagcctacaatgccgatttt
gatggggaccaaatggctatccacgtacccctctctgaagaagcacaagctgaagcacgt
ttgttaatgctagcagcggagcatatcctaaatccaaaagacggtaaaccagtcgttacc
ccatctcaggacatggttttggggaactattaccttactatggaagatgcagggcgtgaa
ggtgaaggtagagtctttaaagatattgacgaagctgttatggcttatcaaaatggctac
gctcatttacatagccgagttggtattgcagttgacagtatgcccaataaaccttggaaa
gatagtcaaagacataaaatcatggtcacaacagttggtaagattttattcaatgctatc
atgcctgaggatctaccctatttacaagaaccaaacaatgctaacttaactgaaggcaca
ccagataaatatttccttgagccaggacaagatatccaaagccttattgatggtttggaa
atcaatgtaccgtttaagaagaagaatcttggaaatatcattgctgaaaccttcaaacgt
ttccgtacaactgaaacgtcagcctttcttgaccgtttgaaagatttgggttattatcat
tcaaccctagccggcttaacagtgggtattgctgatattccagttattgataataaagct
gaaattattgaagcagctcatcaccgtgtggaagatattaataaagccttccgtcgtggt
ttgatgactgaagatgaccgctacgttgctgttacgacaacatggcgcgaagctaaagaa
gcccttgaaaaacgtctgattgaaacacaagatcctaagaacccaatcgttatgatgatg
gactcaggtgcccgtggtaatatctctaacttctcccagcttgctggtatgcgtggtttg
atggctgctcccaacggacgtatcatggaattaccaattctttcaaacttccgtgaaggt
ttgaccgttttggaaatgttcttctcaacccatggtgctcgtaaagggatgaccgatacg
gcccttaagactgccgattcaggttacctaacacgtcgtttggttgacgtggcccaagat
gttatcattcgtgaagatgattgtggtactgatcgtggacttgttatccgagcaattact
gacggtaaagaggttactgaaacacttgaagaacgccttcaaggacgttacacgcgtaaa
tcagttaaacaccctgaaactggtgaggtgcttattggtgctgatcagttaatctctgaa
gacatggctcgtaagatcgttgaagcaggcgttgaagaagtgactatccgttctgtcttc
acatgttcaacccgtcatggggtttgtcgtcactgttatggcatcaacttagccacaggt
gatgctgttgaagttggtgaagcagttggtacaatcgctgcccaatctatcggggaacca
ggaacacagcttaccatgcgtaccttccataccggtggtgttgcgtccaatactgatatc
actcaaggtcttcctcgtatccaagaaatctttgaagcacgtaaccctaaaggggaagct
gttatcactgaagttaaaggtaaagtagtggatatcgaagaagatgcttcaacacgtact
aagaaagtctacgttgaaggtaaaactggtaaaggtgaatatgttgttcctttcactgct
cgtatgaaagtggaaattggtgatgaagttaaccgcggtgcctcactaactgaagggtct
atccaacctaaacgtttgcttgaagttcgtgacactctatcagttgaaacttatctattg
gcagaagtacaaaaagtttaccgtagccaaggggttgaaatcggagataaacacgttgaa
gtaatggttcgccaaatgcttcgtaaagttcgtgttatggatccaggggatacagatctc
ttgccaggaacattgatggatatcgctgactttacagaagctaataaagaaatcgttatt
tcaggtggtattccagcaacatcacgccctgtgcttatggggattacaaaagcctctctt
gaaacaaattcattcttgtcagccgcatccttccaggaaacaacacgtgtccttacagat
gctgctatccgtggtaaaaaagaccatcttcttggccttaaagaaaatgttattatcggt
aagatcattccagcaggtactggtatggcgcgctaccgtaacattgaaccacaagctatc
aatgaagtagaaatcatcgaagaagctgaagttgcagaagaagtaaccgctacagaagaa
taa
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integrated database retrieval system
