Streptococcus pseudoporcinus: NCTC13786_01200
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Entry
NCTC13786_01200 CDS
T07156
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spsu
Streptococcus pseudoporcinus
Pathway
spsu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC13786_01200 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spsu03400
]
NCTC13786_01200 (mfd)
Enzymes [BR:
spsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC13786_01200 (mfd)
DNA repair and recombination proteins [BR:
spsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC13786_01200 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
MFD_D3
AAA_16
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
VEF93838
LinkDB
All DBs
Position
1:complement(1221885..1225385)
Genome browser
AA seq
1166 aa
AA seq
DB search
MDIIELFSQNKVLKEWMINSTKVDRQLVMGLSGSSKALAIAANYRYQNGKLIIITSSQNE
LEKLASDLSALIGEADVYQFFADDVAPAEFIFSSLDKSLSRIEALQFLIDHEAKGILLTT
IIGLKILLPNPRTFQKYSLQFCVGNDYNLDHLVKKLAQIGYQKVSQVINPGEFSRRGDIL
DIYEVRQANPYRMEFFGDEIDGIRSFDSDSQKSIENLREIMISPASEMILEKEDFSRGIS
NLESALHLINAESKSYVEEILAVSKNGYRHKDIGKFLSLFYDKEWTLLDYIPKGVPIFFD
DFQKILDKNASFDLEVANLLTEDLHQGKAFPSLHYFADTYKDVRTYKPATFFSNFHKGLG
NIKFDKLHQLTQYAMQEFFNQFPLLIDEINRYTKSNATVLIQVDSKQAYERLVKNLEDYH
FDIPLVDNGHIQAHQVQMVIGQLTNGFYFADEKVAYITEHEIYHKKIKRRVRKSNISNAE
RLKNYNELVKGDYVVHNVHGIGRFLGIETIQIQGIHRDYVTIQYQNSDRISLPVEQIESL
SKYVSADGKEPKINKLNDGRFQKTKQKVSKQVEDIADDLLRLYAERSQLKGFQFSPDDEL
QASFDNDFPFVETEDQLRSIQEIKKDMESQRPMDRLLVGDVGFGKTEVAMRAAFKAVKDH
KQVAILVPTTVLAQQHYDNFRERFENYPIKVDVLSRFRSKKEQNTSLEKLAKGQVDIIIG
THRLLSKDVQFSDLGLIVIDEEQRFGVKHKEKLKELKNKVDVLTLTATPIPRTLHMSMLG
IRDLSVIETPPTNRYPVQTYVLETNPSLVREAILREMDRGGQVFYVYNKVDTIDKKVSQL
QELVPEAAIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFVENAD
HMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLSEISDKRLEAIKGFTELGSGFKIAMRD
LAIRGAGNILGASQSGFIDSVGFEMYSQLLEEAIANKQGKVKVRRKGNAEINLQIDAYLP
QEYITDERQKIELYKRIRELESKDDYLLLQEEIIDRFGEYPDQVAYLLEIGLFKYYMDKA
FAELVERKGNQVVVRFEKVSLTYYLTQDYFEALAKTALKARISETNGKIDITFDVNYKKD
YDILEELILFGECLGEIKDRKTRKSS
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggatattatagaattatttagtcaaaataaagtcttaaaagagtggatgataaactcg
acaaaggtggacagacaactggtaatgggtttatctggatcaagtaaagccttggctatt
gcagctaattaccgttaccagaatggtaaattaattattattacttctagtcaaaatgaa
ctagaaaaattagcatcagacttgtctgctttgataggagaagctgacgtctatcaattt
tttgcggacgatgttgctcctgctgagtttattttttcttctttggataaatcgttatca
cggatagaagctctgcaatttttaatagaccatgaagctaaaggaatcctgttaacgacc
attataggtttaaagatccttttacctaatcctcgcactttccaaaaatacagtcttcaa
ttttgtgtagggaatgattataatcttgatcacttggtcaaaaagttggctcaaattggt
taccaaaaagttagtcaggtgattaaccctggggaatttagtagacgtggggatatttta
gatatttatgaagttaggcaagcaaatccctatcggatggaattttttggggatgaaata
gacggaattcgtagctttgatagtgatagtcaaaaatctattgaaaatttaagagagatt
atgattagccctgctagtgaaatgattttagaaaaagaagatttttcacgtggcattagc
aatctagagtcagctctccatctgataaatgctgaatcaaaatcctatgtagaggagatc
ctggcagtctcaaaaaatggttatcgccataaggatattggtaaatttctttcacttttt
tatgataaagagtggacattgcttgattatattcctaaaggagtaccaatattttttgat
gatttccaaaaaatattggataaaaatgctagttttgatttagaagttgctaatttatta
acagaagatttacatcaggggaaagctttcccttctttgcattattttgcagatacttat
aaggacgttagaacttacaagccagcaacttttttctctaattttcataagggtttagga
aatattaaatttgacaagttgcatcagctgactcagtatgctatgcaagaattttttaat
caatttcccttattaattgatgaaattaatcgctatacaaaatcaaatgcgacagttctc
attcaagttgactcaaagcaagcttatgaacgattagtaaaaaatttagaagactatcat
tttgatattccattagtagataatggtcatattcaagctcatcaagttcagatggtcatt
ggtcagttaacaaatggattttattttgcagatgaaaaagttgcttatattactgagcat
gaaatttatcataaaaaaattaagcgtcgtgtccgtaaatcgaatattagtaatgctgag
cgtctgaagaattacaatgaattagtaaagggtgattacgttgttcacaatgtccatggg
ataggtcgctttttaggaattgaaaccattcagattcaaggtattcatcgtgattatgta
actatccaataccaaaattcagatagaatttctcttcctgttgaacagattgaaagttta
tcaaaatatgtttcagcggatggtaaagaacctaagataaacaaattaaatgatggtcga
tttcagaagacaaaacaaaaagtcagcaaacaagtggaagatattgctgatgatttatta
aggctatacgctgaaagaagtcagttaaaaggatttcaattttcacctgatgatgaatta
caagcatcctttgataatgattttccttttgttgaaactgaagatcagttacgctcaatt
caggaaatcaaaaaggatatggaaagtcaacgcccgatggatcgtcttttagtaggtgat
gtgggatttggtaaaacagaagtggcgatgagagcagcatttaaagctgtaaaggatcat
aaacaagttgctattttagttccaacaactgtcttagctcagcaacattatgataatttt
agagagcgatttgaaaattatcctattaaggttgatgttttaagccgttttcggagtaaa
aaagaacaaaatacaagtttagaaaaacttgctaaaggtcaagttgacatcattattggc
actcatcgtctcctatcaaaagatgttcaattttctgatttaggtctcattgttattgat
gaagaacaacgttttggcgttaaacacaaagaaaagttaaaggaactaaaaaataaagtt
gatgttttaaccttaacagcaacgcccattcccagaacacttcacatgtcaatgctcggt
atcagagatttatcagttattgaaactcctcctaccaatcgttatcctgttcaaacttat
gttttggagacaaaccctagcttagttagagaggctatcctacgggaaatggatcgtgga
ggtcaagtcttttatgtgtacaataaggttgataccattgacaaaaaagtgtcccagcta
caagaattagtgccagaagcagcaattggcttcgttcatggacaaatgagtgaaattcaa
cttgaaaatactctgattgattttataaatggtgattatgatgttctagtggcaaccaca
atcatagaaacaggggttgatatttctaatgtgaataccttatttgttgaaaatgctgat
catatgggcttatctaccctttatcaactccgggggcgcgtagggcgctccaatcgaatt
gcttatgcttacttgatgtatcgtccagataaagttttgtctgaaatatcagacaaacgt
ttagaagccattaaagggttcacagaattaggatcaggttttaaaattgctatgcgggac
ttagcaattcgtggtgcaggtaatattttaggagcttcacagagtggctttattgattct
gtcggctttgaaatgtattctcaattattagaagaagctattgctaataaacaaggaaaa
gttaaggtaagacgtaaaggtaatgctgaaattaatttacaaatagatgcttacctgcct
caggaatacattactgatgaacgacaaaaaattgagctttataaacgtattcgagaactt
gaaagtaaggatgattatctactcttacaagaggagattattgatcgttttggagaatat
cctgatcaggtagcctatctcttagaaattggtttattcaaatactatatggataaggct
tttgcagaattagttgagcgaaaagggaatcaggtagttgtaagatttgaaaaagtttct
ttaacttattacctcactcaagattattttgaagctttagcaaagacagccttaaaagca
agaattagtgaaacaaatggaaaaattgatattacttttgatgtgaactacaaaaaagat
tatgatattttagaagaattgatattatttggagaatgcttgggtgaaattaaagacaga
aaaactcgaaaatcaagttag
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integrated database retrieval system
