Streptococcus pseudoporcinus: NCTC13786_01434
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Entry
NCTC13786_01434 CDS
T07156
Symbol
rnjA
Name
(GenBank) metallo-beta-lactamase superfamily protein,putative mRNA degradation ribonucleases J1/J2
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
spsu
Streptococcus pseudoporcinus
Pathway
spsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13786_01434 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsu03019
]
NCTC13786_01434 (rnjA)
Messenger RNA biogenesis [BR:
spsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC13786_01434 (rnjA)
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
SIS_2
Motif
Other DBs
NCBI-ProteinID:
VEF94065
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Position
1:complement(1461822..1463507)
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AA seq
561 aa
AA seq
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MSTIDLKPNEVGVFAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDYS
YIVDNLDRVKALVITHGHEDHIGGIPFLLKQANVPIYAGPLALALIRGKLEEHGLLRDSK
MYEINHNTELTFKNMSVTFFRTTHSIPEPLGIVIHTPQGKIVCTGDFKFDFTPVGEPADI
HRMAALGEDGVLCLLSDSTNAEVPTFTNSEKVVGQSILKIIEGIHGRIIFASFASNIFRL
QQAAEAAVKTGRKIVVFGRSMEKAIVNGIELGYIKVPKGTFIEPNEIKDYHANEILIMCT
GSQGESMAALARIANGTHRQVALQPGDTVIFSSSPIPGNTTSVNKLINTIQEAGVEVIHG
KVNNIHTSGHGGQQEQKLMLRLMKPKFFMPVHGEYRMQKVHAGLAEDTGIPEENIFILEN
GDVLALTSDSARRAGHFNAQDIYVDGNGIGDIGTAVLRDRRDLSEDGVVLAVATVDFDTQ
MILAGPDILSRGFIYMRESGDLIRESQRVLFNAIRIALKNKEASIQSVNGAIVNALRPFL
FEKTEREPIIIPMILTPDKED
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacaatcgatttaaaacctaatgaagttggcgtcttcgccattggtggtctaggg
gaaatcggcaaaaacacctacggtattgaatatcaggatgaaattatcattgttgatgcg
gggattaaatttccagaggatgatcttttaggtatcgactatgttattcctgactattct
tatattgttgataatcttgatcgtgttaaagctctagtcattacccatggacacgaagat
catattggtgggattccattcttactaaaacaagctaatgtccctatttacgctggtcca
cttgctctcgctctaatccgtggcaaactggaggaacatggtttgcttcgggattccaaa
atgtacgaaattaaccataatacagaattgaccttcaaaaatatgagcgtcactttcttt
agaacaactcattccattccagaacctttaggtattgtcatccatacccctcaaggcaag
attgtttgtaccggcgatttcaaattcgatttcacccctgttggtgagccagcagatatc
catcgcatggctgcactcggtgaagatggcgttctttgtctcttatcagattccacaaat
gccgaagttccaactttcaccaattctgaaaaagtggttgggcaatctatcttaaaaatt
attgagggaatccacggacgcatcatattcgcttccttcgcttccaacattttccgtctg
caacaggctgctgaagctgctgttaaaactggacgaaaaattgttgtcttcggccgttcc
atggaaaaagctattgtgaacggtattgaactaggttacatcaaggttccaaagggtacc
tttattgaacctaatgaaattaaagactaccacgctaatgaaatcttgattatgtgtact
ggtagccaaggggaatccatggctgcccttgcaagaattgccaatggtactcatcgtcaa
gttgctttgcagccaggcgataccgttatcttctcatcaagtccgattcctggaaataca
accagcgtcaataaactgatcaatactatccaagaagctggcgtagaagtcattcacggt
aaagtcaataacatccatacatctggtcatgggggccaacaggaacaaaaactcatgttg
cgcctgatgaaaccaaaattcttcatgcccgttcatggtgaataccgaatgcagaaagtc
catgccggcttagctgaagatacaggtatcccagaagaaaatattttcattctcgaaaat
ggtgacgttctagccttaacaagcgactcagctcgccgtgcaggtcatttcaatgctcaa
gatatctatgttgatggaaatggcattggtgatatcggaacagctgttctacgtgatcgt
cgtgatctttcagaagatggggtcgttctagcagtagcaaccgttgattttgacacacaa
atgattctagctggtccagatattctcagccgtggctttatctacatgcgcgaatctggt
gatttaatccgagaaagtcaacgcgtcttgtttaatgccatacgtattgcacttaagaat
aaagaagctagcattcaatctgttaatggtgctatcgtaaacgctcttcgtcctttcttg
tttgaaaaaactgaaagagaacctattatcattccaatgatattaacccctgataaagaa
gactaa
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