KEGG   Streptococcus pseudoporcinus: NCTC13786_01434
Entry
NCTC13786_01434   CDS       T07156                                 
Symbol
rnjA
Name
(GenBank) metallo-beta-lactamase superfamily protein,putative mRNA degradation ribonucleases J1/J2
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
spsu  Streptococcus pseudoporcinus
Pathway
spsu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spsu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NCTC13786_01434 (rnjA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spsu03019]
    NCTC13786_01434 (rnjA)
Messenger RNA biogenesis [BR:spsu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     NCTC13786_01434 (rnjA)
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B Lactamase_B_2 RMMBL SIS_2
Other DBs
NCBI-ProteinID: VEF94065
LinkDB
Position
1:complement(1461822..1463507)
AA seq 561 aa
MSTIDLKPNEVGVFAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDYS
YIVDNLDRVKALVITHGHEDHIGGIPFLLKQANVPIYAGPLALALIRGKLEEHGLLRDSK
MYEINHNTELTFKNMSVTFFRTTHSIPEPLGIVIHTPQGKIVCTGDFKFDFTPVGEPADI
HRMAALGEDGVLCLLSDSTNAEVPTFTNSEKVVGQSILKIIEGIHGRIIFASFASNIFRL
QQAAEAAVKTGRKIVVFGRSMEKAIVNGIELGYIKVPKGTFIEPNEIKDYHANEILIMCT
GSQGESMAALARIANGTHRQVALQPGDTVIFSSSPIPGNTTSVNKLINTIQEAGVEVIHG
KVNNIHTSGHGGQQEQKLMLRLMKPKFFMPVHGEYRMQKVHAGLAEDTGIPEENIFILEN
GDVLALTSDSARRAGHFNAQDIYVDGNGIGDIGTAVLRDRRDLSEDGVVLAVATVDFDTQ
MILAGPDILSRGFIYMRESGDLIRESQRVLFNAIRIALKNKEASIQSVNGAIVNALRPFL
FEKTEREPIIIPMILTPDKED
NT seq 1686 nt   +upstreamnt  +downstreamnt
atgtcaacaatcgatttaaaacctaatgaagttggcgtcttcgccattggtggtctaggg
gaaatcggcaaaaacacctacggtattgaatatcaggatgaaattatcattgttgatgcg
gggattaaatttccagaggatgatcttttaggtatcgactatgttattcctgactattct
tatattgttgataatcttgatcgtgttaaagctctagtcattacccatggacacgaagat
catattggtgggattccattcttactaaaacaagctaatgtccctatttacgctggtcca
cttgctctcgctctaatccgtggcaaactggaggaacatggtttgcttcgggattccaaa
atgtacgaaattaaccataatacagaattgaccttcaaaaatatgagcgtcactttcttt
agaacaactcattccattccagaacctttaggtattgtcatccatacccctcaaggcaag
attgtttgtaccggcgatttcaaattcgatttcacccctgttggtgagccagcagatatc
catcgcatggctgcactcggtgaagatggcgttctttgtctcttatcagattccacaaat
gccgaagttccaactttcaccaattctgaaaaagtggttgggcaatctatcttaaaaatt
attgagggaatccacggacgcatcatattcgcttccttcgcttccaacattttccgtctg
caacaggctgctgaagctgctgttaaaactggacgaaaaattgttgtcttcggccgttcc
atggaaaaagctattgtgaacggtattgaactaggttacatcaaggttccaaagggtacc
tttattgaacctaatgaaattaaagactaccacgctaatgaaatcttgattatgtgtact
ggtagccaaggggaatccatggctgcccttgcaagaattgccaatggtactcatcgtcaa
gttgctttgcagccaggcgataccgttatcttctcatcaagtccgattcctggaaataca
accagcgtcaataaactgatcaatactatccaagaagctggcgtagaagtcattcacggt
aaagtcaataacatccatacatctggtcatgggggccaacaggaacaaaaactcatgttg
cgcctgatgaaaccaaaattcttcatgcccgttcatggtgaataccgaatgcagaaagtc
catgccggcttagctgaagatacaggtatcccagaagaaaatattttcattctcgaaaat
ggtgacgttctagccttaacaagcgactcagctcgccgtgcaggtcatttcaatgctcaa
gatatctatgttgatggaaatggcattggtgatatcggaacagctgttctacgtgatcgt
cgtgatctttcagaagatggggtcgttctagcagtagcaaccgttgattttgacacacaa
atgattctagctggtccagatattctcagccgtggctttatctacatgcgcgaatctggt
gatttaatccgagaaagtcaacgcgtcttgtttaatgccatacgtattgcacttaagaat
aaagaagctagcattcaatctgttaatggtgctatcgtaaacgctcttcgtcctttcttg
tttgaaaaaactgaaagagaacctattatcattccaatgatattaacccctgataaagaa
gactaa

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