Streptococcus pseudoporcinus: NCTC13786_01479
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Entry
NCTC13786_01479 CDS
T07156
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
spsu
Streptococcus pseudoporcinus
Pathway
spsu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NCTC13786_01479 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spsu03400
]
NCTC13786_01479 (recD)
Enzymes [BR:
spsu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NCTC13786_01479 (recD)
DNA repair and recombination proteins [BR:
spsu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCTC13786_01479 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
Viral_helicase1
AAA_11
UvrD-helicase
DEAD
AAA_12
AAA_22
nSTAND3
HHH_5
AAA_14
TsaE
AAA_16
Herpes_Helicase
PIF1
NTPase_1
AAA_28
DUF815
5_3_exonuc
RsgA_GTPase
SLFN-g3_helicase
UvrD_C
AAA
NACHT
Zeta_toxin
TrwB_AAD_bind
NPHP3_N
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
VEF94110
LinkDB
All DBs
Position
1:complement(1504650..1507067)
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AA seq
805 aa
AA seq
DB search
MEYFFSGSIDRIIFENASNFFKILLVELEDTDSDFDDVDIIVTGTMADVAEGEDYTFWGE
LTQHPKYGQQVKLTRYQKNKPSSSGLIKYFASDHFKGIGKKTAEKIVQLYGENTIDKILE
DPSQLETISGLSKANRQAFITKLKLNYGTEQIIAGLVALGISNYYAFQIFDTYKDQSLEM
VKENPYRLVEEIQGIGFKMADTLAAEVGIASDAPERFRAALLHCLRQESINRGDTYIEAR
DLLDYAITLLEETRQIECDPAQVAQELSQLIADQKVYNRDTKIFDSSLFLAEDGIQKHLN
RILATPLTKQLEQSQISDAIQTIEDQQAIHYDHVQKEAISKALTNKVFILTGGPGTGKTT
VIRGILDAYAQLHQIDLDKKDIPIILAAPTGRAARRMNELTGLPSGTIHRHLGLNGDNDY
QAIEDFLDCDLIIIDEFSMVDTWLANQLLAALASNTQVIIVGDSDQLPSVGPGQVLADLL
KVDSLPQIALRKIFRQSEDSTIVELANQIRQGHLPNDFKEKKADRSYFDAHAQHIPEMIT
KIVTSAIKSGIDPEEIQILAPMYKGQAGINSLNQLMQNLMNPLQNQTEFLFNETRFRLGD
KVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDEIVMTFDGSQVTYPRNEWLKITLAY
AMSIHKSQGSEFQVVILPITRQSGRLLQRNLIYTAITRSKSKLIMLGEYSAFDYAIKHVG
DRRKTYLVQRFDAHKKGNQPLQSQQNQLKSSAISPDKSSVIEAPRTAKELAKPREDYRLT
VDNFLSIDPMIGLIQEDILSFFKKI
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggaatattttttctctggaagcattgatcggattatctttgaaaatgctagtaatttt
tttaaaatcttattagtggaacttgaggatactgacagtgattttgatgatgttgacatt
attgtaacaggaaccatggctgacgtggctgaaggagaagactatactttttggggcgaa
ttaacccaacatcctaagtatgggcaacaggtcaaattgacacgttaccaaaaaaataaa
ccaagctcatcaggtctcatcaagtattttgccagcgaccattttaaaggtataggaaaa
aagacggctgaaaaaattgtccagctttatggtgaaaacactattgataaaatcttagaa
gatcctagtcagttagagacaatatctggtctctcaaaagctaatcggcaagcctttatt
accaaattaaagctcaactacggtaccgaacaaatcattgctggcctagtagcactaggc
atttctaattactatgcctttcaaatttttgatacctataaagatcaaagcctagaaatg
gtcaaagaaaatccctatcgtctggtggaagagatccaaggaatagggtttaaaatggcc
gatacacttgctgctgaagttggaattgctagtgatgctccagaacgtttccgtgccgcc
cttttacactgcttacggcaagaatccataaatcgaggtgatacctacattgaagcccga
gacctgcttgactatgctattaccctcttagaggaaacacgtcaaatagaatgtgaccct
gctcaagttgctcaagaattgagtcaattaattgctgaccaaaaagtctacaaccgtgat
accaagatctttgatagcagtctcttccttgctgaagatggcattcaaaagcacctcaac
cgcatacttgcaacccctctaacaaagcaattagaacaaagtcaaattagcgatgccatt
caaactattgaagaccagcaagctatccattatgatcacgtccaaaaagaagctatctct
aaagcattaaccaataaagtatttatccttactgggggacctgggacaggaaaaacgacg
gttatcagaggaatcctagatgcctacgctcagttgcatcagattgaccttgataaaaaa
gatatccccattattctagctgctccaacggggcgtgctgcccgacgcatgaacgaatta
acgggtttacctagtggaacaatacaccgtcaccttggtttaaacggcgataatgattat
caagccattgaagactttttagattgcgaccttatcatcattgatgaattttccatggtg
gatacttggttggctaatcaactacttgctgcccttgcttccaacacccaagtcatcatt
gtaggagatagtgatcaattaccttctgtcggccccggtcaagtcctagcggacctttta
aaagtagatagcctccctcaaattgccttacgtaaaatttttagacaatctgaagactca
acgattgttgagctggctaatcaaatacgtcagggtcatttacctaatgatttcaaagaa
aaaaaggcggatcgttcttattttgatgctcatgctcaacatataccagaaatgattacc
aaaattgttacctctgccattaagagtggtattgaccctgaggaaatccaaattttagca
cctatgtataaaggccaagccggtattaatagtttgaatcaattaatgcaaaacctcatg
aatcctcttcaaaatcaaaccgaatttctctttaatgaaacgcgttttcgactgggagac
aaggtcttacatttggtaaacgatgctcaattaaatgtctttaacggagatattggttac
attaccgatttaattccagctaaatatactgaatcaaaacaagacgaaattgttatgact
tttgacgggagtcaagtgacctatccccgcaatgagtggctaaaaattactttggcttat
gccatgagtattcataaatctcaagggagtgaatttcaagttgttatcctgcctataaca
cgacaatctgggcgcctgcttcaacgtaacttaatttataccgctattacccgctccaaa
agcaaattgataatgctcggtgaatactcagcctttgattatgccatcaaacatgtgggt
gaccggcgtaaaacctatttggtgcagcgctttgacgctcataaaaagggcaaccaaccc
ttacaatcccaacaaaatcagctaaagagctcggcaatttccccagataaaagctcagta
atagaggcaccgaggacagcgaaggagttagctaagccccgagaagactatcgcttaacc
gttgataattttctctcaattgatccaatgattggtcttatccaagaagatatcctctct
tttttcaaaaaaatatga
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