Streptococcus pseudoporcinus: NCTC13786_01820
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Entry
NCTC13786_01820 CDS
T07156
Symbol
rnr
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spsu
Streptococcus pseudoporcinus
Pathway
spsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13786_01820 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsu03019
]
NCTC13786_01820 (rnr)
03016 Transfer RNA biogenesis [BR:
spsu03016
]
NCTC13786_01820 (rnr)
Enzymes [BR:
spsu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC13786_01820 (rnr)
Messenger RNA biogenesis [BR:
spsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC13786_01820 (rnr)
Transfer RNA biogenesis [BR:
spsu03016
]
Prokaryotic type
tRNA degradation factors
NCTC13786_01820 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
VEF94440
LinkDB
All DBs
Position
1:1836915..1839266
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AA seq
783 aa
AA seq
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MKEKIMMYLKEHGKSNINDIAASLGMAGAKKFPSLIKEISKMESKRLLRFSDDGCITLRR
QGDKKKEMTIQGIFRANKAGFGFLQVTDTEDDMFIGKNDVGYAIDGDLVEVVVKKPADRL
KGTAAEAKVVGIIERALRTVVGKFILDDEKPKYAGYIKSKNQKVQQKIYIKKEPVVLDGT
EIIKVDIEKYPTRGHDYFIANVRDIVGHQGDVGIDVLEVLESMDIVSEFPETVIAEANAI
SEAPSAKDLIGRVDLRKEITFTIDGADAKDLDDAIHIKPLANGNYELGVHIADVSYYVTE
GSALDQEAIARGTSVYVTDRVVPMLPECLSNGICSLNPNVDRLTQSAIMEIDSNGKVLNH
YICQSVINTTFRMTYSAVNDMLAGDEETLQEYGAISESVEHMAKLHKILETMRLKRGALN
FDTSEARILVNEKGMPVDIVVRTRGIAERMIESFMLVANECVAEHFARGHYPFIYRVHEE
PKSEKLQKFIDYASVFGIQIKGTAAKISQEALQDFMAKVDGKPGAEVLNMMLLRSMQQAR
YSETNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIREYSQATEDKRDHFAMIIPELASSS
SRLERRAIDAERIVEAMKKAEYMEEHIGETFDGIVSSVVKFGLFVELPNTIEGLVHVTSL
PEYYNYNERTMTLQGEKSGKVFKVGQAIQVKLVKADKETGDIDFEYQASDFDIIEKLTKP
KKRNQREGQSSSAGRRKKGGRALAQTDAKKKKTSSVRKGQAKSSSTHKPFYKKVAKKKVK
RKG
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaaaattatgatgtatttaaaggagcacggcaaatcaaatattaatgatatt
gcagcttctttaggaatggcgggagctaaaaaatttcctagccttatcaaagaaatatct
aagatggaaagtaagcgacttttacgattttctgatgatggttgtatcaccttacgtaga
caaggtgacaagaaaaaggaaatgactattcagggtatctttagagctaataaagcagga
tttggttttttacaggtgaccgatacagaagatgacatgtttatcggaaaaaacgatgtt
ggttatgctattgatggggaccttgtagaagtagttgttaaaaaaccagcagatcgccta
aaaggcacagctgcggaagctaaagtcgttggcattattgaacgtgccttaagaacagta
gttggtaaattcatcttagatgatgaaaaacccaagtatgcaggctatataaaatcaaaa
aatcaaaaagttcaacaaaaaatttatattaaaaaagagccggtcgtccttgatgggact
gaaatcatcaaggttgatattgaaaaatatccaactaggggtcatgattatttcattgcg
aatgtccgagatattgttggccatcaaggagatgttgggatagatgttttggaagtttta
gaatcaatggatattgtttcagaatttccagaaacggttattgcagaagcaaatgctatt
tccgaggcaccgagtgctaaagatttgataggccgtgttgatttacgtaaggaaattacc
tttactattgacggcgccgatgctaaggatttggatgatgctattcatattaagcctttg
gctaatggtaattatgaactaggagttcacattgctgatgtctcctattatgtgactgaa
ggctctgctttagaccaagaagctattgcacgtggaacttctgtatacgttactgatcgt
gttgtcccaatgttgccagagtgtttgtcaaacggcatttgctctttaaatccaaatgta
gatcggttgactcaatcagccattatggagattgattctaatggtaaggttttaaaccat
tatatttgccagtcggtcatcaatacgactttccgaatgacttacagtgctgttaatgac
atgttggctggtgatgaggagaccttgcaagaatatggtgcaatttctgagtccgttgag
catatggccaaacttcataagattttagaaacgatgcgccttaagcgtggagctctgaat
tttgatacttcggaagcgaggattcttgtcaacgaaaaaggcatgcctgtggatattgtt
gttcgcactcgaggaatagctgagcgaatgattgagtcctttatgctagtggcaaatgag
tgtgtagctgagcattttgcgcgtgggcactatccctttatttaccgtgttcatgaagaa
ccaaaatcggaaaaattacaaaaatttattgattatgctagtgtttttggaattcagatt
aaaggaacagcagcaaaaattagtcaagaagctttacaagatttcatggctaaagttgat
ggtaaacctggagctgaggtccttaatatgatgctccttagatctatgcaacaagcgcgt
tattctgagaccaatcatggtcactatggattagctgctgattactatacgcattttaca
agtccgattcgtcgttatcctgacctattagtccatcggatgattagggaatacagccaa
gcaactgaagataagcgtgatcattttgccatgattatcccagagttagcgtcttcatca
tcacgtttagaacgtcgagcaattgatgcagaacgtattgtagaagcaatgaaaaaagca
gaatacatggaagaacatattggtgaaacctttgatgggattgtctctagtgtcgttaaa
tttggactctttgtggagttaccaaatacaattgaaggtttggttcatgtgacgagcttg
ccagagtattataattacaatgaacgcacaatgactttacaaggtgaaaaatcaggcaaa
gtatttaaggttggtcaagcgattcaggttaaattagtcaaagctgataaagaaactggt
gatattgattttgaatatcaagcaagtgattttgatattattgaaaaattgactaagcca
aagaagagaaatcaaagagaaggtcagtcctcatcagctggtcgtcgtaaaaaaggaggc
agagctttagcccaaacagatgctaagaaaaagaaaacctcatctgttagaaaaggtcag
gcaaagtcttcgtcaactcataagcccttctacaaaaaggtagcaaagaaaaaagtaaaa
aggaaaggttag
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