Shewanella psychrophila: Sps_00090
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Entry
Sps_00090 CDS
T05063
Name
(GenBank) RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG
KO
K02405
RNA polymerase sigma factor FliA
Organism
spsw
Shewanella psychrophila
Pathway
spsw02020
Two-component system
spsw02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Sps_00090
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Sps_00090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spsw03021
]
Sps_00090
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
spsw02035
]
Sps_00090
Transcription machinery [BR:
spsw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Sps_00090
Bacterial motility proteins [BR:
spsw02035
]
Flagellar system
Flagellar assembly proteins
Stator
Sps_00090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
DUF1492
UPF0122
GerE
CTD3
Surface-like_ins_dom
Aldo_ket_red
HNH_repeat
Motif
Other DBs
NCBI-ProteinID:
AQS35311
UniProt:
A0A1S6HIG2
LinkDB
All DBs
Position
complement(99203..99925)
Genome browser
AA seq
240 aa
AA seq
DB search
MNSAQLAYQETSEEKTVNRLSESQVMKQYLPLVKRSVSQLRSHCGAVLAVEDMEQIGMMA
LLESSRRYPGEFDNGFLSFAGQRIRGAILDELRRQDWRPRPVRQQAHELNDAVRKLTRML
GRDPTDIEVSDSMGISRDQYRERLYASQSESMKSLDDMLSAGSHFADKANVIEQFSSKQT
LKKAISKLSKREQVILSLYYQHELNLKEIAGTLGLTETRICQLHKQAVKHLKEIYQLWER
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
atgaactctgctcaactcgcataccaagagaccagtgaagaaaagacagtaaacagactc
agtgaaagccaggtgatgaagcagtatttacctttggtaaagcgatcagtctctcagctt
agaagccactgcggagccgtacttgctgtcgaggatatggaacagattggcatgatggct
ctactcgaatcctcgagacgctaccccggagagtttgacaatggcttcttatcatttgct
ggacagcgaattcgcggtgcaattcttgatgagcttagacgccaggactggcgtcctagg
cccgttagacaacaagctcacgagcttaatgacgctgtgcgtaaactcacccgcatgctg
gggcgtgatccgacagatatagaagtctctgattcgatggggataagcagagaccaatat
agagaacgtctctatgcctctcaatctgagtccatgaaaagcttagatgacatgctaagt
gcgggcagccatttcgccgataaggctaatgtgattgagcagttttcatccaaacaaaca
ttaaaaaaggcaatatctaaattaagtaaaagagaacaggtgatcctgtcgctttattat
caacatgaactcaatttaaaagaaattgccgggaccttaggattgactgagacgcggatc
tgccagctacataaacaggcggtgaagcatcttaaggagatttaccaactttgggagcgg
tag
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integrated database retrieval system
