Shewanella psychrophila: Sps_00390
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Entry
Sps_00390 CDS
T05063
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
spsw
Shewanella psychrophila
Pathway
spsw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sps_00390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spsw03021
]
Sps_00390
03400 DNA repair and recombination proteins [BR:
spsw03400
]
Sps_00390
Enzymes [BR:
spsw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sps_00390
Transcription machinery [BR:
spsw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sps_00390
DNA repair and recombination proteins [BR:
spsw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sps_00390
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
AQS35601
UniProt:
A0A1S6HJA6
LinkDB
All DBs
Position
415260..416249
Genome browser
AA seq
329 aa
AA seq
DB search
MQGSVTEFLRPRLVDIEQVNPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSSKEGVQEDILEILLNLKGLAVVIEGKDEAMLTLSKSGAGPVTAADITHDGD
VTIMNPEHVVCHLTGNNEISMRIRVERGRGYVPASARAQTEDDDRPIGRLLVDASFSPVA
RIAYNVEAARVEQRTDLDKLVIDMTTNGTIDPEEAIRRSATILAEQLDAFVELRDVTEPE
QKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPASLVDDL
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgttacagaatttcttagaccgcgtctcgttgatatcgagcaggttaat
ccaacacgtgccaaagttacacttgagccgcttgaacgtggttttggtcacactttaggt
aacgcgttgcgtcgtatcctattgtcgtctatgccaggctgcgcggtaaccgaagtagag
attgatggtgtactgcatgaatacagtagcaaggaaggcgtgcaagaggatatccttgag
atcctactaaaccttaaaggtttggcagtagtgatcgaagggaaagacgaagctatgctt
actttaagtaagtcaggcgcaggccctgttactgcagcagatatcacccatgatggtgat
gttacaatcatgaatcctgagcatgttgtctgtcatctgacaggtaacaatgaaatcagc
atgcgtatccgcgtagagcgtggtcgtggttatgtaccggcttcagcccgtgcacaaacc
gaagacgatgatcgtcctattggtcgcttgttggttgatgcttctttctcgcctgtcgct
cgtatagcctacaatgtagaagctgcacgtgttgaacagcgtactgacttagataaactc
gttatcgatatgaccacaaacggtactattgatcctgaggaagctatccgtcgttctgca
accatcttggctgaacagctagatgcatttgttgagctacgtgatgtgactgagccagag
cagaaagaagaaaagccagagttcgatccgattctgttgcgtcctgtggacgatttagag
ctaactgtacgttcagctaactgtttgaaggctgaagcgattcattatatcggagatctg
gtacagcgcactgaagttgagctgctgaagacacctaacttaggtaagaaatctcttacc
gaaattaaggatgttttggcttctcgcggactgtcgttgggtatgcgtctagaaaactgg
cctccagccagcctagtcgacgacctttaa
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