Shewanella psychrophila: Sps_00616
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Entry
Sps_00616 CDS
T05063
Name
(GenBank) putative peptidoglycan binding protein,Ykud domain-containing protein
KO
K21470
L,D-transpeptidase YcbB
Organism
spsw
Shewanella psychrophila
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
spsw01002
]
Sps_00616
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
spsw01011
]
Sps_00616
Peptidases and inhibitors [BR:
spsw01002
]
Cysteine peptidases
Family C82
Sps_00616
Peptidoglycan biosynthesis and degradation proteins [BR:
spsw01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
Sps_00616
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
PG_binding_1
PG_binding_3
Motif
Other DBs
NCBI-ProteinID:
AQS35810
UniProt:
A0A1S6HJW6
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All DBs
Position
658466..659866
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AA seq
466 aa
AA seq
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MFARCASAKVFVLLIILLSTKPLLAMEHSEAALNSLLYQVQFVRLIKPSTQIEQDYRALT
LGAMELKLARVQRIQSELEQFWASLGVPTNAMNLKGSDNLFQQVLSLEPISKDYLATSNK
IRYLLWLEQKGDWSELVSNSWLKLGDKHNLVSEISRRLKGFGDLREYNPVNTLFDANVEN
GVRHFQQRHGLKLDGIIGPETLRWINIKPVKRAELLAINFINKTSYLASIEPSFLIINIP
AFELELIDNGQVALQSRVIVGKPYRQTPLLSSRISNLVINPSWRVPRRLLTRDLLPKVRE
DGGYIRARNFNVFDSQGLLVSKTAQEWQDLAHGRFPYRLVQKPGKENTLGRYKFYFENKY
SVYLHDTADKALFEESNRALSSGCIRIENVEGLANWMASNLVTDKQTWVDMQIERQKTQW
FSLDQSLPVHLVYWTAWVDKLGVAQFRNDIYHKNSTLNSASAHLSP
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcaaggtgtgcgagtgctaaagtgtttgtcctcttgattatcttgctcagtacc
aagcctctacttgctatggagcactcagaagcagcattaaactctttgctctatcaagtt
caatttgtacgtttaattaaaccatcaacacaaattgaacaagattatagggcattaacc
ttaggcgccatggaattaaaactggctagggtacagcggattcagtctgagctagagcaa
ttttgggcatctctaggggtccctactaacgcaatgaacttgaaaggctcggataatttg
ttccaacaggttctttccctggagccaatctctaaggactatctagctaccagtaataaa
atccgttacttgctgtggctggagcagaaaggggactggagtgagttagtgtccaattct
tggttaaagctgggcgataagcataacttagtgtctgaaattagtcgtagattaaaaggg
tttggtgatttaagggaatacaatcctgtcaatacactgtttgatgccaatgttgaaaac
ggtgttaggcactttcaacagcgtcatgggttgaaactagatggaattattggccccgaa
acgcttcgctggatcaatattaaaccagtgaaacgggctgagttgttagccattaacttt
ataaataagactagttacttagcctcaattgagcctagctttttaatcattaacattcca
gcattcgaattagaacttatcgacaatggccaagtggcgttacagtctcgggtgatagtg
ggtaaaccctatcgtcagactcccttgttaagcagtcgaatttcaaaccttgtgatcaat
ccaagctggcgtgtacctaggcgtttattaactcgggatctgttacctaaagtcagggag
gatggtggttatattcgggctcgaaattttaatgttttcgatagtcaggggcttttagtg
agtaaaactgcccaagagtggcaagatttagctcatggacgttttccctatcgcttggtt
caaaagcctggaaaggagaataccttagggcggtataagttttattttgagaataaatac
agtgtttatcttcatgatactgcagacaaggcgttgtttgaagagtccaaccgtgcgctt
tcatctgggtgtatacgtattgaaaatgtcgaggggctagctaattggatggcatctaat
ttggtgacagataagcaaacctgggttgatatgcagattgagcgtcaaaaaacccaatgg
ttttctttggatcagagcttacccgttcatttagtttactggaccgcttgggtcgataaa
ttgggagtagcccaatttagaaatgatatataccataaaaattctacacttaactcggca
tcggctcatctgtctccatga
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