Shewanella psychrophila: Sps_00738
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Entry
Sps_00738 CDS
T05063
Name
(GenBank) putative peptidoglycan binding protein,Ykud domain-containing protein
KO
K21470
L,D-transpeptidase YcbB
Organism
spsw
Shewanella psychrophila
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
spsw01002
]
Sps_00738
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
spsw01011
]
Sps_00738
Peptidases and inhibitors [BR:
spsw01002
]
Cysteine peptidases
Family C82
Sps_00738
Peptidoglycan biosynthesis and degradation proteins [BR:
spsw01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
Sps_00738
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
PG_binding_1
Scaffold
Motif
Other DBs
NCBI-ProteinID:
AQS35931
UniProt:
A0A1S6HK71
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All DBs
Position
801490..802974
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AA seq
494 aa
AA seq
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MKNKIFLISLLFCLFIIPIPSFSDGNSLASNLLDTQEVELIYELNGQELIWFDSYGLSLD
GLSLAQLLEDLGIGLEKFLVVEQVDRTKMSKIERDRAYTRACLYLLDRVSRLSLNTNVNL
ENKFTQAVINHRLSNFIEQVLPLYDEVSKLRGMIRKYKKLTHKPWPNIEQSEFRLGQSSD
KISTLRGMLIELGDLSVKPELKQRTSIYDPDIVLGIKSFQVRHGLEVNGQLDTQTAESLS
IKPETRIVQMQLNLWRWFNLPKALPERFVWINIPGYQLQLLDQGDKVLDMKVIVGKPQTP
TPIITSSLTRLTINPSWTPPWSIVSKELLPLDENQPGYLNRQKFELRKYGANTSLDLVDI
SSSSILYLLSEYQLVQAPGPKNALGKYRFSIPNNHSIYLHDTPSKFLFSKRIRAMSHGCI
RLSDPKGLSDYLMRSDVRAADVARAAKGTLTHYYSIISPTPVYITYHTIWVDELGKLQLR
PDIYGLDRISAYDE
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaataaaatatttttgatcagcttattattctgtttattcatcattcctattccc
tctttttctgatggtaactctctagcatcaaatttgttagatactcaagaagtggagctt
atttatgagcttaacggccaggagttaatttggtttgactcctatggtttaagtttagat
ggcctttcattggcgcaattattagaagatctaggaataggtcttgaaaagtttctagtt
gttgaacaagttgatcggacaaaaatgagtaagatcgaacgagatagagcttatacccga
gcttgtctctatcttttagatagagtctcaaggttaagcctgaatacaaatgtaaactta
gaaaacaaattcacacaagcggttataaaccataggttatctaattttattgaacaagtt
ttacctctttatgatgaagtctcaaaattaagaggaatgataaggaaatataaaaaattg
actcacaaaccttggcctaatatagagcaatcggagttccggctcggccagagctcagat
aaaatctcgacactaagaggaatgctaattgagcttggagatttaagcgttaaacctgaa
ctaaaacaaagaacgtcgatatatgatccagatatagtattagggattaaatcatttcaa
gtgcgccatggactcgaagttaatggtcagctcgatactcaaacggcagaaagcttgagt
attaaaccggaaacgagaatagttcaaatgcagttaaatttatggcgctggttcaattta
ccgaaagccttgcctgaacgatttgtttggataaatatccctggttaccaattacaacta
ttggaccaaggcgacaaggtattggatatgaaagtgatagttggtaagccgcagacacca
acacctattatcacttcttccttaactcgtttaactatcaaccctagctggacacctccc
tggagtattgtgagtaaggaactgctccctttggatgaaaatcagcctggatatttaaac
cgacaaaaatttgaattacgaaaatatggggcaaacacctctcttgacttggtcgatatt
agtagttcttcgatactgtatttattgtcagaatatcagctggttcaagctccaggtcct
aaaaatgcccttggtaagtaccgtttctctatacctaataatcactctatttatttgcat
gacacaccatcgaaatttcttttttctaaacgtataagagccatgagtcatggttgtatc
agattgtcagatcctaagggtctttcggattacttgatgcgatcagatgttagagccgca
gatgttgcaagagccgcgaaaggaactctgacgcactattattctataatcagtcccaca
cctgtatatatcacttatcacacaatctgggtcgatgagcttggtaaattacagcttaga
cctgatatctatggtttagataggatctccgcatatgatgaatga
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