Shewanella psychrophila: Sps_01044
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Entry
Sps_01044 CDS
T05063
Name
(GenBank) sigma-54 interacting regulator
KO
K11908
sigma-54 dependent transcriptional regulator
Organism
spsw
Shewanella psychrophila
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
spsw03000
]
Sps_01044
Transcription factors [BR:
spsw03000
]
Prokaryotic type
Helix-turn-helix
Other families
Sps_01044
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
HTH_8
Mg_chelatase
AAA_2
AAA_5
GAF_2
AAA
AAA_16
HTH_50
Motif
Other DBs
NCBI-ProteinID:
AQS36233
UniProt:
A0A1S6HL47
LinkDB
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Position
complement(1158901..1160460)
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AA seq
519 aa
AA seq
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MTSKQWLEQTSSLLECTQKHELTAQLMETLQQQLGLSDCVLLVPSVDGRRLILSQFRSDN
CLKVDPQAEWDVTDFSHPFAHVLQTGKPMVLDYFSLAYWREEVKFVQLVSGLPQEINLLM
FPLIQDRHVSGLLIFAVSVADTKEMLQDQQWQHYCGVFMRHWQLLSTVASQSGQASFLAD
SLSQAKDEIRHQKSLKALSQVLVGEADKMYKLRGEILRVSGTDLSVMVQGATGTGKELVA
KAIHDHSLRHDEPFVAINCAAIPENLLESELFGYEKGAFSGAHAKKRGLIAQADKGTLFL
DEIGDMPLNLQSKLLRVLESGHFRALGASKEEHSNFRLVAATHVNLKQRVDDGEFRRDLY
YRLCQFPIHVPALNERLDDLSLLVNHFINGFNRHHRREITGVRYETLLKLKRHSYPGNVR
ELRNIIEYACALTSHHGELEVSALPEFESAELIDIGCISSVEGDFGDIEDLRLAVAEFER
QVIRDRLDKFKGDRAKAAMSLGMPKRTFSHKCLKLEINE
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
gtgaccagtaagcagtggctagagcagacctcaagtctgctcgaatgcacccaaaagcat
gagttaacggctcagttgatggagacgctacagcaacagctgggcctgagtgactgtgtc
ttactggtgccttctgtggatggtcgacgcttaattctgtcgcagtttaggtctgataac
tgcctcaaggttgatccccaggccgaatgggatgtcactgattttagtcatccttttgcc
catgtgttacagacgggtaagcctatggtgctggattattttagcttggcttactggcgc
gaggaagttaagtttgttcagctggtgtcaggacttcctcaggagatcaatctgctgatg
tttcccttgatccaagacaggcatgtttctggcttgctgatttttgcggtctcggtggcg
gatactaaggagatgttacaggatcagcaatggcaacattactgtggtgtatttatgcgc
cactggcagctgctcagtaccgtggcgagtcagtcgggccaagccagttttcttgccgac
tcattgtcccaagccaaggatgaaattcgtcatcagaagagccttaaggccctgtcacag
gttctggtgggcgaagctgataaaatgtataagctgcggggtgagatcttacgcgtctcg
ggtaccgatctgtccgtgatggtgcagggagccaccgggactggcaaggagttggtagcc
aaagccattcacgatcactccttgcgtcatgatgaaccatttgttgctatcaactgcgcc
gccattccggaaaacttgcttgaatctgagctgtttggctatgaaaagggcgccttttcc
ggtgctcatgccaaaaagaggggactgatagcccaggcggataagggcacactgtttctc
gatgagatcggtgatatgccacttaacctgcaatctaagttattacgggtactcgagtca
ggccactttcgggccttgggcgcatcgaaagaggaacactcaaattttcgcttagtcgct
gcgactcatgtgaacctcaaacagagagtcgatgacggcgagtttcgccgagatctttac
taccgtctgtgccagttccccattcatgtgccagcgttaaatgagcgtctcgatgatctg
tctctgctagtgaatcattttatcaatggttttaatcgtcaccacaggagagagatcaca
ggggtacgttacgagacgctgctcaaactcaagcgtcacagttatcctggcaatgtacgt
gagttgcgtaacattatcgagtatgcctgcgccctgacgagtcaccatggtgagctagag
gtatctgcattacccgagtttgaatctgctgagttaatcgacattggatgtatctcgtct
gttgagggagactttggtgatatcgaagatcttaggctcgcggtggcggaatttgaacga
caggtgatccgtgacaggctggataaatttaagggcgacagggccaaggccgccatgagt
ctgggcatgcccaaacggaccttctcgcataaatgcttaaagttggagataaacgaataa
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