Shewanella psychrophila: Sps_01373
Help
Entry
Sps_01373 CDS
T05063
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spsw
Shewanella psychrophila
Pathway
spsw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sps_01373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsw03019
]
Sps_01373
03009 Ribosome biogenesis [BR:
spsw03009
]
Sps_01373
Enzymes [BR:
spsw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Sps_01373
Messenger RNA biogenesis [BR:
spsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sps_01373
Ribosome biogenesis [BR:
spsw03009
]
Prokaryotic type
rRNA processing factors
Sps_01373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AQS36540
UniProt:
A0A1S6HLZ6
LinkDB
All DBs
Position
1512092..1515670
Genome browser
AA seq
1192 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GADRHGFLPLKEIAREYFPKGYSFQGRPNIKEVIKEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKAALSELEVPNGMGLIVRTAGVGKDSAEL
AWDLKVLEHHWTAIKEASVGRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEEA
KQHVALVRPDFADRIKRYDAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGSDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMRDAVHLDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLAL
SILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPNMTTP
DYRVSRHRKDDQISESSYKLLEQPETNLYEPRKLERAAAPEPALKGFTAPVKAPEPKAKV
QAAPKATEEPGLIAKFFTALGGLFKAEPQQEEPKKQNESRPQNRNNRRPARKNDSRRNES
RRTRDDKEQSGDKSERSSRPNRNKRADSTEERSNRDKGEQSKRPSRHESKSTHENKSTRT
RPQDDATDENPKQEVARERRQRRNMRRKVRIDNEKSQKLDEQNTAVVSDEVVVETAQAQV
KEDKQSRPKRQPRKAKPRTADSQVKDDVQVEKAAENATAEVEASAQETQQDSKLDAVPQD
SVTVETASTEAGSAEAKLDDADDKPREGQRRSRRSPRHLRAAGQRRRREEDDGESATDAT
PAFIPNETEVEFQANQVEAMAEAQSAPTIPVAPVQAEAKVEAQVRVEAKAQSAAAAPTKP
AAPVQTEAPAKVKVKAEAQSASAAPAKPAAPVKTETPMKVEVKAEAQSASAAPAKPAAPV
KTETPVKVEVKAEAQSASAAPAKPATPVKTETPVKVEVKAEAQSAAVAPTKPAAPVKAEA
PIKIEVKAEAQSASAAPTKPAAPVQTEAPVKVEAKAEVQSASVAPTKPATPVQTEAPVKV
EAKAEIKTATAAATKPATKVKVTAPVAVEAAREVITAAPVQAKPETPVKTAIKAKGASRF
GTMVSSDMIAPIVETRENVDVPKGRQYEASESLQADAKPKTANSANSGMVRP
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgttaatcaatgcaactcaatctgaagagttgcgcgtagccctagttgat
gggcaacagctatatgatctagatattgaaagtccaggtcacgagcaaaagaaagccaat
atatacaagggtaaaataacccgtgtagagccctctcttgaagcggcatttgtcgattat
ggtgcagaccgtcatggattcctgcccctcaaagaaatcgccagagaatacttccctaaa
ggttactctttccaaggtcgcccaaatattaaagaggtgataaaagagggccaagaagtt
atcgttcaaattgataaagaagaacgtggtaataaaggtgccgcgttaacgacttttatc
agtttagcaggctcatatctggtattaatgccaaacaaccctcgcgccggtggtatctcc
cgccgtatcgaaggtgatgagcgcacagaactaaaagcggcattatccgaattagaagtc
cctaatggtatgggattaatagtacgaacagccggtgtaggcaaagactcagcagaactt
gcctgggatctaaaagttctggaacatcattggacagcaattaaagaagcgtctgtcggt
cgtcctgcgcctttcctcattcatcaagaaagtaacgtcatcgttcgtgcgattcgcgac
tacttacgtcgtgatgtgggtgaagtacttatcgatcatccgcgtattttcgaagaagcg
aaacagcatgttgccttggttcgtcccgattttgcagacagaatcaaacgttatgatgct
gaagtgcctctgttcactcatttccaaattgagacacagattgaatctgcattccaacgt
gaagttcgtttaccatctggtggctcgatagttatcgacccgacagaggcattaacttca
atcgatatcaactcggctcgtgccactaaaggcagtgatattgaagagactgcattaaac
accaacctagaagccgccgatgagattgctcgccaattacgtcttcgtgatctgggtggt
cttgtggttatcgattttatcgatatgactcccgtacgtcatcagcgtgaagttgaaaac
agaatgcgtgatgcggttcacctcgatagagcccgtgttcagctaggacgcatttctcgc
tttggcctaatggaaatgtcacgacaacgcctcagaccttcactagaagagtctgcagca
catctatgtcctcgttgtcacggccaaggtaccattcgtggcactgagtcattagcactc
tcaattcttcgtctcatggaagaagaagcgattaaagagaatacctctcaaatcgaagcg
attgtgccagtcgatgtcgcggctttcctactcaatgagaaacgaaaagccattcgcatc
acagaacagcgccatgatgtagaagtctatgtgatcccagatccaaatatgacgacaccg
gattaccgagtttcacgtcatcgcaaagacgatcagataagcgagtctagttataagtta
ctagaacagcctgagactaatttgtatgagcctagaaagcttgagcgcgcagcagcacct
gagcccgcgttaaaaggattcacggcgccagtaaaagcacctgagcccaaagctaaagtt
caagccgcacctaaggctactgaagaaccaggtttaatcgctaaattcttcacagctctt
ggtggactgttcaaagcagaacctcagcaagaggaacctaagaaacaaaacgaatcacgc
cctcagaatcgtaataatcgtcgcccagctcgcaagaatgattcacgccgcaacgaaagt
cgtcgtactcgtgatgataaagagcaatctggcgataagagcgagcgtagttcacgtcct
aatcgcaataagcgtgcagattcaactgaagagcgctcaaacagagataaaggcgagcaa
agcaagcgcccatctcgtcatgagagcaagtcgactcatgagaacaagtcgactcgaact
cgtccacaagatgatgctactgatgaaaaccctaaacaggaagttgccagagagcgtcgt
caacgtagaaatatgcgcagaaaagtgcgtatagataatgagaagtcacaaaaacttgat
gagcaaaacactgctgtagtttctgatgaagtggttgtagaaacggctcaggctcaggtt
aaagaagacaagcaatctcgtcctaagcgccagcctcgcaaggctaagcctagaacagca
gatagccaagtgaaagatgatgttcaagttgaaaaagcagctgagaatgctacagccgaa
gtagaagctagcgcacaagaaactcagcaagatagtaaacttgatgcagttcctcaagat
agcgttacagttgaaacagcctcaactgaagcgggctctgctgaagctaaacttgatgat
gcagatgataagccacgtgaaggtcagcgtcgcagtcgtcgtagcccacgccatcttcgt
gcagcgggtcaacgtcgtcgtcgtgaagaagatgacggtgagagtgcaacggatgcaacg
ccagctttcatacctaatgaaactgaagttgaattccaggcgaatcaagtagaagcgatg
gctgaagctcaatcggcaccgactatacctgtagctcctgtacaagcggaagccaaagtt
gaagctcaggttagagtcgaagctaaagctcaatcggcagctgctgcaccgaccaaacct
gcagctccggttcaaactgaagctccggcgaaagttaaagtgaaagcagaggcccaatca
gcatctgcagcgccggctaagccagcggctccagttaaaactgaaacaccaatgaaagtt
gaagtaaaagcagaagctcaatcggcatctgcagcgccggctaagccagcggctccagtt
aaaactgaaacaccagtgaaagttgaagtaaaagcagaagctcaatcggcatctgcagcg
ccggctaagccagcgactccagttaaaactgaaacaccggtgaaagttgaagtaaaggct
gaagctcaatctgcagcggtagcgccgactaaacctgcggctccagttaaagctgaagca
ccgataaaaattgaagtgaaagcggaagctcaatctgcatcggcagcgccgaccaaacct
gcagctccggttcaaactgaagcacctgtgaaagttgaagctaaggctgaagttcaatca
gcatcagtagcaccgactaaacctgctactccagttcaaactgaagcaccagtgaaagtc
gaagctaaagctgaaattaaaacagccaccgctgcagcaactaaacctgctactaaggtt
aaagtcacagcaccagtagccgtggaagcagcaagggaagtcattacagcggcgccggtc
caagctaaaccggaaacacctgtaaaaacggccattaaagctaaaggcgctagccgcttt
ggcactatggtgagttcagacatgatagctcctatagtagagaccagagaaaacgtagat
gtccctaaaggacgtcaatacgaggcatcggaatctttacaagccgatgctaagccgaaa
acggcaaactcagctaactctggaatggttcgtccataa
DBGET
integrated database retrieval system
