Shewanella psychrophila: Sps_01652
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Entry
Sps_01652 CDS
T05063
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spsw
Shewanella psychrophila
Pathway
spsw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sps_01652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spsw03400
]
Sps_01652
Enzymes [BR:
spsw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sps_01652
DNA repair and recombination proteins [BR:
spsw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sps_01652
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AQS36817
UniProt:
A0A1S6HMR9
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All DBs
Position
1818508..1821981
Genome browser
AA seq
1157 aa
AA seq
DB search
MKAFSILTPPAVKSASKAQTLYTLGGASQAIALANLVQNHAGITVAVTHDTPTALLLESE
LDYLLKGTTFPVWLFPDRETLPYDSFSPHQDLVSQRLETLSRLPNAKQGLVIVPLSTLMV
RLPPKSFLAGNVLILKKGDNYCLQDVKQQLVNTGYHLVEQVYEHGEFAVRGSIIDLFPMG
SEQPFRIELFDDEVESIRHFDPESQRSSGEIDSIRLLPAKEFPTDDQAIEGFRQRYRRRF
ERLVKEPESVYQMVSRKIFPAGIESYLPLFFDETASLFDYLPEHAQLVNIGDLEAASKAH
LGEVELRYEDRRVDPLRPLLEPKELYLLTEQVFANFKALPRSQLKIGKASDKEQQAKLEK
LPDLTANHKLKQPLSQLQEYATKETSILFSAESEGRREALLELLSKIDIKPKRFGSIEEF
TASKTKLGLIVSPLSNGCIIEKSRGGKFSLVCETELFGHRISQKRRRDRQKQISSDALVK
NLAELKVGQPIVHLDHGVAKYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVSSLHLISRY
SVGPDEEANLNKLGNETWAKAKKKAVEKIRDVAVELLDVYARRQARPGTACKVDEQEYAQ
FANSFPFEETIDQETSINAVMTDMCSPISMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQV
AILVPTTLLAQQHFENFKDRFADWPVKIEVISRFKTAKEQKLIMDELSKGKVDIIIGTHK
LLHSEGDFENLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRD
LSIIATPPAKRLAVKTFIREYDLSTIREALLREILRGGQVYFLHNTVDTIEKRANEIREL
LPEARVVTAHGQMRERDLERVMSDFYHQKFNVLVCTTIIETGIDVPSANTIVIERADNFG
LAQLHQLRGRVGRSHHQAYAYMMTPHPKSITSDARKRLEAIGALEDLGAGFMLATQDLEI
RGAGELLGDEQSGHISKIGFTLYMEMLEDAVKSLKEGKEPSLSQMLRRQCEIELRIPALL
PDDFVHDVNIRLSLYKRIANCDSENAIDELKVELIDRFGMLPDATKNLMQLTLYKHLATS
LGIKKLEMHTKGGSLEFNDDHCIDPGFIIGLLQSQPQNYRMDGPSKLKFLIPAESHKDRL
ALVKLLLEQLSQHRLGE
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttctcaatattgacgcctcccgcagtcaaaagtgcatcaaaagcgcaaaca
ctatacacattaggcggtgcctctcaagccatcgccttagcgaacctggttcaaaaccat
gccggtatcacagttgctgtgactcacgacacacccacagccctgttactggaatccgaa
ctggattatctgctcaaaggaaccacttttccggtgtggcttttcccggacagagaaacc
ttgccctatgacagtttctccccccaccaagatctggtatcccaaaggttagagacctta
tcacggttacccaatgccaagcagggactggttatcgttcccttgagcaccttgatggtg
cgcttacctcctaagtcattcttagctggcaatgtgcttatactgaaaaaaggcgataac
tattgtcttcaggatgtaaaacaacaactggtaaacacaggctatcatctggtcgagcaa
gtatatgaacatggcgagtttgctgtcagaggctcgataatcgatctattcccaatgggc
tcagagcaacctttccgtatcgagttatttgatgatgaagtcgagtccatcagacacttc
gacccagagagccagagatcaagtggggaaattgactccatacgcttactaccagcgaaa
gagttcccaaccgatgatcaggcaattgaaggctttaggcagagatatcgtcgacgcttc
gaacgtttggttaaagaaccagaatctgtctatcagatggtcagtcgaaaaatattccct
gctgggatcgaaagctatttaccgttatttttcgacgaaacagccagcctgtttgattat
ctgccggaacatgctcaactggtcaatataggtgatctcgaagccgcatctaaggcccat
ttaggcgaagttgagctgagatatgaagatagacgggttgatcctttacgcccattattg
gaacctaaagagctctatctactcactgaacaggttttcgcgaattttaaggctctacca
aggagtcagcttaagatcggcaaggcctcagataaggagcaacaagctaagctagaaaaa
ctgcctgatctgacagccaatcataaactaaaacagccactgagccagcttcaagaatat
gcaaccaaagagaccagcatactcttcagtgctgagtcagaagggcgccgtgaagcctta
ctggaactactcagtaagatagatatcaagccaaaacgattcggcagcatagaggagttt
accgcctcaaagactaagcttggactcatcgtctcccccctctctaacggctgtatcata
gaaaagagccgaggtggaaaatttagcctcgtctgtgaaactgaactattcggtcatcgc
atatctcaaaagcgtcgccgagacagacagaaacaaataagtagcgatgccttagtcaaa
aacttagccgagctaaaagtcggccaacccatagtccacttagatcatggagtcgcaaag
tatcagggactggaaaccttagataccggtggccttgtcgccgaatacctcaagttagaa
tatgctggcggtgacaagctttatgtcccagtgtcatcgcttcacctcattagccgttac
agtgtggggcccgatgaagaagctaacttaaacaaactaggcaatgaaacatgggccaag
gctaagaagaaagcggtagaaaaaatccgcgatgtcgccgtcgaactactcgatgtctac
gcacgaagacaggctagaccaggcacggcatgtaaagtcgatgagcaagagtatgcacaa
ttcgccaatagttttcccttcgaagagaccatagatcaagagacctctatcaatgccgta
atgacggatatgtgctctcccatctccatggatagacttgtgtgtggcgatgtcggcttc
ggtaagactgaagtagcaatgagggctgccttcgttgcggtcaacgacggcaagcaagtc
gctatcttagtacccaccaccttactggcccagcaacacttcgagaatttcaaagacaga
tttgccgattggccggttaagattgaggttatttctcgcttcaagacagcaaaagaacag
aagctgatcatggatgagctaagtaaaggtaaagtcgatatcattataggcacccataag
ctactgcattcagagggtgattttgagaacctaggcttgttggtcatagatgaggaacat
aggttcggggttaggcagaaagaaaaaattaaggctctgcgggctaacgtagatatcttg
accttaacggcgacaccgatccccagaaccttaaatatggccatgtcgggcatgcgtgat
ctgtcgatcatcgccactccaccggccaagcggctcgcggtaaagaccttcatcagagaa
tacgatctcagcaccatacgtgaagccttgctgcgtgaaatcctccgtggcgggcaagtt
tattttctacataatacagtagacaccatagagaagcgcgccaacgaaatacgtgagctt
ctaccagaagctcgggtggtgacagctcacggccagatgcgggaacgcgatttagaaaga
gtgatgtctgacttttatcatcaaaagttcaacgtactcgtctgtaccaccattatcgag
acgggcatcgatgtgccctcggctaacaccatagtcatagaaagagccgataactttggc
ttagcccaactgcaccaacttagagggcgagtcggtcgctcccatcatcaggcttatgcc
tacatgatgaccccgcacccaaaaagcattacctccgatgcccgaaaacgtcttgaagcc
atcggggccttagaagatttaggtgctggctttatgctggcgacccaagatcttgagatc
cgcggtgccggcgagctattaggcgatgaacaatcgggccatatctccaagataggattt
accctctatatggagatgctggaagatgcagttaaatcacttaaagaaggtaaagaaccc
tctctcagtcagatgctcaggcgtcaatgtgagatagaattgcgaattccagccttactt
cccgatgattttgtccatgacgtcaatatccgtttatctctctataaacgcattgccaac
tgtgattcagaaaatgccatcgatgagctaaaagttgaactcatcgatcgatttggcatg
ctgcctgacgccactaagaatctgatgcaactgacattgtacaagcatctagccaccagt
ctcggcattaaaaaacttgaaatgcacactaaggggggcagtctggaatttaatgacgat
cactgtatcgatcctggctttattatcggtttactgcaaagtcagccacaaaactatcga
atggatggcccgagtaagttaaaattcctcattccagccgagtcacacaaggatagactg
gcactggtaaaattgctattagagcaattatcacaacatcgtcttggagaataa
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