Shewanella psychrophila: Sps_02078
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Entry
Sps_02078 CDS
T05063
Name
(GenBank) hypothetical protein
KO
K21470
L,D-transpeptidase YcbB
Organism
spsw
Shewanella psychrophila
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
spsw01002
]
Sps_02078
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
spsw01011
]
Sps_02078
Peptidases and inhibitors [BR:
spsw01002
]
Cysteine peptidases
Family C82
Sps_02078
Peptidoglycan biosynthesis and degradation proteins [BR:
spsw01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
Sps_02078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Scaffold
PG_binding_1
PG_binding_3
Motif
Other DBs
NCBI-ProteinID:
AQS37238
UniProt:
A0A1S6HP08
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All DBs
Position
2347150..2348127
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AA seq
325 aa
AA seq
DB search
MKNLNPFSLLLILGLFLQASPFKIFAAVELSSITYAEQAHSPEVDRQNAIFESLLEPLLL
GETSKIAEFSIISPYLTSHLYQKRQYLSLWNDKDYAASVIETIGDADDEGLFKEDYHYQE
LVSLYQAQELDDWQDPYQRAQFDILLTDAIITYGIHLINGKVNPDTLGKTWNYDEAVIKL
GTVIEELNTHIQAQDIAERLAQFNPQLTPYDELKSALKHYRQLADNQTFSNISYLSVVKT
GESSPMLPSIAQRLILLNYLSPEADISHFSPEFVAAIKRYQTAHSLNADGIIGKGTINSL
NVPFSRRADQDQYGASQMALSRSHR
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacctgaatccatttagtttgctgctaattcttggccttttcctacaagctagc
ccctttaaaatctttgcagccgttgaattgtcctccataacgtatgcagaacaagcccac
tcccctgaagttgatcggcaaaatgctattttcgaatccttgctcgagccattactgctg
ggggaaacctcgaaaattgccgaattcagtatcatcagcccctatttaacctcgcatctg
tatcaaaaaagacaatatctcagcctgtggaatgacaaagattatgcggcctcggtaata
gagaccatcggagacgccgacgacgaaggcttatttaaagaggattatcattatcaggaa
ttggtatcactctaccaggcccaagaactcgatgattggcaagacccatatcagcgggct
caattcgatatcttgctcacagatgcaatcattacctatggtattcacctgatcaacggc
aaggtcaatccagataccttaggaaagacctggaattatgatgaggccgtcatcaagcta
ggcactgttattgaggagctaaatacccatatacaggctcaagatatcgccgaacgattg
gcccagttcaatccacaactcaccccttatgacgagttaaagtcggcactaaaacactat
cgtcaattagccgataaccagactttctcaaacatcagctacctaagcgtagtaaaaacc
ggcgaaagctctcccatgttgccaagcattgcccagagactgattttactcaattacctc
tctcctgaggcggacatcagtcactttagccctgagtttgttgcagccataaaaagatat
caaactgctcatagcttgaatgcagacggcatcataggcaaagggacgataaactccctc
aatgtgcctttctcaagacgtgcagatcaggatcaatatggagcgagccagatggctctc
agccgatctcaccgatga
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