Shewanella psychrophila: Sps_02117
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Entry
Sps_02117 CDS
T05063
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
spsw
Shewanella psychrophila
Pathway
spsw03030
DNA replication
spsw03430
Mismatch repair
spsw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sps_02117
03430 Mismatch repair
Sps_02117
03440 Homologous recombination
Sps_02117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spsw03032
]
Sps_02117
03400 DNA repair and recombination proteins [BR:
spsw03400
]
Sps_02117
Enzymes [BR:
spsw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Sps_02117
DNA replication proteins [BR:
spsw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Sps_02117
DNA repair and recombination proteins [BR:
spsw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Sps_02117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AQS37276
UniProt:
A0A1S6HP26
LinkDB
All DBs
Position
complement(2391043..2394516)
Genome browser
AA seq
1157 aa
AA seq
DB search
MSDPSFVHLRVHSDFSMSDGLAKVKPILAKVSELGMPAVALTDQTNLCGLVKFYGACHGT
GIKPIIGADFWVKVPGFDKDLCSITVLAMDNDGYLNLTLLISDAYLRGHIDDRAVIDQDW
LAKYSKGLILLSGGRHGDIGRALLKGNQPQVDSLVDFYQTHFPDRYYLELLRTGRPDEET
YLHLAVALAEEKDLPVVATNQVVFNSPEFFDAHEIRVAISDGFTLADPRRPKKYSEQQYF
KSCEEMCELFEDIPEAIANTVEIAKRCNVTVRLGEYFLPNFPTGDLSIEDFLVKVSEDGL
EERLEFLFPDPEVRAEKRPEYDKRLDIELKVINQMGFPGYFLIVMEFIQWGKDQDIPIGP
GRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFCMDRRDEVIDHVAE
LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMVPAEPGMTLAKAFEVEPA
LQESYDADEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFAPIYCDSEGKNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKQKKLGKDPVRIESIPLDDHKSFKLL
QRYETTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSFPDAEYQHESLQWVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKKPEEM
AKQRGTFEEGAINNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMSADMDNTDKIVILVDECERMGQPLLPPDVNKGLLKFNVDDEGNIVYGIGAIKG
VGDGPVESILAARKDGPFKDLFDFCARVDLKKLNKRIMEKLICAGALDSLGPHRAAMMAT
LPEAVRAADQNAKAEAIGQHDMFGLLNSDPEDIKQQFVQCTPWPDKVWLEGERETLGLYL
TGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVIATRVMMTKRGSKMGLVTLDDK
SARLEVMLFTEAFEKFNHLLEKDRILIIEGEVSFDDFSGGNRMTARNIIDMGEARNHFAS
AVEVDIDSDLVDETWLDSFKQVVEPWKKGAVPIIVNYAQPQAKAQFKLGDNWRVNPTDEL
MLALETLTGAGKVRILF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatcccagttttgtgcatctgcgcgtccacagcgatttttccatgtctgatggc
ctagccaaagtgaagcctatcttagctaaggtgtcagagcttggcatgccggctgttgcg
ttaaccgatcagactaacctatgtggtctagttaaattctatggtgcctgtcatggtacg
ggtataaagcccatcataggtgccgacttttgggttaaagtccctggtttcgacaaagat
ttatgttcgattactgtgttagccatggataatgatgggtatttgaatttaactttatta
atcagtgatgcttatctgaggggccatatcgatgatagagccgttatcgatcaagattgg
ctggctaaatatagtaagggactaatactactctcgggtggaagacacggagatattggc
agagcgcttctaaaagggaatcagcctcaagtcgattcattagtcgatttttatcagact
catttccctgaccgttattatctggaattgctccgcaccggacgccccgatgaggagact
tatttgcatctggcagtggcgctggctgaagagaaagatttacctgtagtggcaaccaat
caggtggtgtttaatagcccggaatttttcgatgctcatgagatccgtgtcgcaatttca
gatggttttaccttagccgatcctcgccgcccgaagaaatacagtgagcaacaatatttt
aagagctgcgaggagatgtgtgagctgttcgaagatattcctgaagcgattgctaataca
gtggagatcgccaagcgctgtaatgtaacagtacgcttgggtgagtatttcctgcctaac
ttccctacgggggatctctccatcgaagacttcttggttaaagtgtcagaagatggctta
gaggagcgcctggagtttctatttcccgatccagaggtgagggctgagaagcgtccggaa
tacgataagcgtctggatattgaacttaaagttatcaaccagatgggttttcctggctac
tttctcattgtgatggaatttattcagtggggaaaagatcaagatattccaatcggtccg
ggtcgcggctccggagcgggttccttagtggcttatgctcttaaaattaccgatctcgac
cctctggagtatgaactcttgtttgagcgtttcctcaaccctgaacgtgtttccatgccg
gattttgatatcgatttttgcatggacagacgagatgaagttatcgatcacgtagccgag
ctatatggtcgtgatgccgtatctcagatcatcaccttcggtaccatggctgccaaggcc
gttatacgagatgtggggagggtattaggccatccctatggcttcgtcgaccgtatctct
aaaatggtgcctgcagagcctggcatgactctggcaaaagccttcgaggtcgaacctgca
ttgcaggagtcttacgatgcagacgaggaggtcaaagatctcatcgacatgtgtcggatt
ttggaaggcgtgacgcgtaacgcgggtaagcatgcgggtggggtggtgatatcgcctacc
acaattaccgattttgctcccatctattgtgactcggaaggaaaaaacccggttacccag
ttcgataagaatgatgtcgagaccgcgggcctggtcaagtttgatttcctgggactgaga
accttgaccatcatcgactgggctttgcagatgatcaaccccaagcagaaaaaattgggc
aaagatcccgtgcgcatcgagtcgattcccctagatgatcataagagctttaaactgtta
cagcgctatgagactacggcggtattccagctggaatcccgtggtatgaaagatttgatc
aagcgtcttcaaccagatagcttcgaagatatgatcgctctggtggctttattccgtccg
ggcccacttcagtccggcatggtagataactttatcgagcgtaagcatggccgagaggaa
gtctctttcccagatgctgagtatcaacatgagtctctacaatgggtgcttgagcccacc
tatggcattattctttatcaagagcaggtaatgcagatcgctcaggttctcgctggttat
tcactcggtggtgcggatatgctacgtcgagccatgggtaagaagaaacccgaagagatg
gccaagcagcgtggtaccttcgaagagggagccatcaataacggtgtcgacggcgaactg
tcgatgaaaattttcgatttggtggagaagtttgcgggttacggatttaacaagtctcac
tcggctgcctatgcgctggtttcttatcagacactttggctaaagacccactatccggcc
gagtttatggcggcagttatgtcagctgatatggacaatacggacaagatcgtcattctg
gtggatgagtgtgaacgcatggggcaacctctgctgccaccggatgtaaacaagggcttg
ctgaaattcaatgtcgatgatgagggcaacatcgtctatggtatcggtgccatcaagggg
gtgggtgatggacccgttgagtcgatactggcagcgcgtaaggatggaccattcaaagat
cttttcgatttctgtgcccgagtcgaccttaaaaagttaaataaacgcattatggaaaag
ctcatctgtgccggtgccctggatagcttagggcctcatcgcgccgccatgatggcgaca
ttacccgaggctgtacgtgccgcagatcaaaatgctaaggctgaggcaataggccagcac
gatatgttcggtttgctcaatagtgatcctgaagacattaagcagcaatttgtccaatgt
accccttggccggataaggtctggcttgaaggtgagcgtgaaaccttaggcctctacctg
accggccacccgattaatcagtacctcaaagagctgaagcattacacatcgggtcgcctc
aaagatgtgcatcctaccgagcgtggcaagaccatgaaagccgctggtttggttattgcc
acgcgggtgatgatgaccaagcgtggttccaagatgggactggtgaccttggacgataag
agtgcccgcttggaagtgatgctgttcacagaggcgttcgagaagtttaaccatctgttg
gaaaaagatcgcatcttgatcatcgaaggagaggtcagtttcgatgatttctccggcggt
aaccgtatgacagccagaaatatcatagacatgggtgaggcgcgtaaccattttgctagt
gcagttgaggtggatattgacagtgacctagtcgatgaaacttggctagatagcttcaaa
caagtggtggaaccgtggaaaaagggcgcggttcccatcatagttaattatgctcaacca
caggctaaggcccagtttaagttgggggataactggagggtgaacccgacagatgaactc
atgttggcgctggaaaccttaaccggagccggcaaggtgaggatcttgttctaa
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