Shewanella psychrophila: Sps_02939
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Entry
Sps_02939 CDS
T05063
Name
(GenBank) ATP-dependent RNA helicase CsdA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spsw
Shewanella psychrophila
Pathway
spsw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sps_02939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsw03019
]
Sps_02939
03009 Ribosome biogenesis [BR:
spsw03009
]
Sps_02939
Enzymes [BR:
spsw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sps_02939
Messenger RNA biogenesis [BR:
spsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sps_02939
Ribosome biogenesis [BR:
spsw03009
]
Prokaryotic type
rRNA helicases
Sps_02939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AQS38086
UniProt:
A0A1S6HRD1
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All DBs
Position
3369157..3370998
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AA seq
613 aa
AA seq
DB search
MSSNEQTFRELGLSEPLLRALDDLGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAF
ALPLLNSIDPSVHAPQILVLAPTRELAVQVAEAFASYAKFMKGLHVLPIYGGQSMHQQLN
ALRRGPQIIVGTPGRVMDHMRRGTLKLDSLKAMVLDEADEMLKMGFIDDIEWILEHTPKQ
RQLALFSATMPEQIKRVANKYLTEPVHVKIAATTTTVETIEQRFVQVSQHNKLEALVRVL
EVEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIII
ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI
ERATKSRISPMDVPSPETVTERRLSRLGEQVAEVIAKDSLDFMKGAVAKLCQELEVDTDV
LAAALLQQVQKDRPLQLPSIHERQRDSRDDRNSRDRNDRGDRPARGERSERPRRDSRPTP
SNLGTADSLKDNPDVKMCRYIIDVGRDNGVGVGNIVGAVANEANIDSRYIGQIQLFDQIT
AIDLPAGMPADVLQHLRKVRVCGRPLNIRESEGAELPSGGDSRPARRPRKASSDRRPSGD
RKPHRKGGAPKES
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccaatgaacaaactttccgcgaactcggcctttccgagcctcttttgcgtgct
cttgacgaccttggctatgagaagccaacaccgattcaagccgcaagtatcgaccctctt
atggccggtaaagacatactaggtcaggcgcagactggtacaggtaaaaccggtgctttc
gcactgccactactgaacagcatagacccatcggttcatgctcctcagattttagtctta
gcaccgactcgtgaacttgcagtacaagttgctgaagcattcgccagctacgctaagttc
atgaaaggcttacatgtactaccaatttacggtggtcagagcatgcatcaacagctgaac
gccctcagacgtggccctcagatcatcgttggtacgcctggtcgtgtaatggaccatatg
cgtcgcggtacacttaagctagattcactaaaagctatggtgctcgacgaagccgatgag
atgctaaaaatgggcttcatcgacgatatcgaatggatccttgagcatacacctaagcaa
cgtcaacttgctcttttctctgcgactatgccagagcaaattaagcgtgttgccaataaa
tatttgacagagccagttcacgtcaagattgctgcgacaactacgacagttgaaaccatc
gaacaacgtttcgttcaagtgtcacaacataacaagcttgaagctctggtacgtgtttta
gaagttgagaagaccgaaggtattatcatcttcgttcgtactcgtaacagttgtgttgaa
cttgctgaaaagcttgaagctcgcggctatgcatcatcgccacttcatggtgatatgaac
cagcaagcccgtgagcgtgctgttgatcagcttaagcgcggcaagttagacatcattatt
gcaacagacgtcgcagctcgcggcctagatgttgagcgtatcggacacgtagttaactac
gatatcccatatgatactgaagcttacgttcaccgtattggtcgtacaggtcgtgcaggc
cgtacgggtatggccattctttttgttacacacagagaaatgcgtatgctgcgcactatc
gaacgtgcgactaagagccgtatctctcccatggatgtcccaagcccagaaacagtaact
gaacgtcgtctatctcgtctaggtgagcaagttgcagaggttattgctaaagactcttta
gacttcatgaagggtgcagttgcgaagctatgtcaagagctagaagtcgataccgatgta
cttgcagctgcattactacagcaagttcagaaagatcgcccgctacagttaccatcgatt
cacgaacgtcaacgtgatagccgtgatgatcgtaactctcgtgaccgcaatgatcgcggt
gaccggcctgctcgtggcgagcgcagtgagcgtccacgtcgtgattcacgcccgactcct
agtaatttaggtacagctgactcacttaaagacaatccagacgttaagatgtgtcgctac
atcatagacgttggccgtgacaatggcgttggtgtcggtaacattgttggtgcagtagct
aatgaagctaacatcgacagccgttacataggtcaaattcagttgttcgatcaaataaca
gctatcgaccttcctgccggaatgccagcggatgtactacaacaccttaggaaagtgcgt
gtttgtggtagacctctgaacattcgtgaatcggaaggtgctgaactgccttcaggtgga
gatagccgtccggcacgtcgtccacgtaaagcctcaagcgatcgtcgtccatcaggtgac
agaaaaccacatcgtaaaggtggcgctcctaaagagagctaa
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