Shewanella psychrophila: Sps_03138
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Entry
Sps_03138 CDS
T05063
Name
(GenBank) ATP-dependent DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
spsw
Shewanella psychrophila
Pathway
spsw03420
Nucleotide excision repair
spsw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sps_03138
03430 Mismatch repair
Sps_03138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spsw03400
]
Sps_03138
Enzymes [BR:
spsw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sps_03138
DNA repair and recombination proteins [BR:
spsw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sps_03138
MMR (mismatch excision repair)
Other MMR factors
Sps_03138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_12
ResIII
Motif
Other DBs
NCBI-ProteinID:
AQS38281
UniProt:
A0A1S6HS00
LinkDB
All DBs
Position
complement(3614261..3616426)
Genome browser
AA seq
721 aa
AA seq
DB search
MDVSSLLDGLNDEQRAAVGAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAV
TFTNKAAAEMRERVEKVSGSNMGRMWIGTFHGLAHRLLRTHYQDANLPQTFQIIDSDDQL
RLIKRILKSLNLDEKQYPPRQAQGYINGKKDQGLRPKHIDAGGFPIEQNLLQIYQVYQES
CDRAGLVDFAEILLRAHELWLNKPHVLKHYQDRFKNILVDEFQDTNAIQYAWIRVLAGEG
ANVMIVGDDDQSIYGWRGAQVESLHKFLEDFPKASTIRLEQNYRSTGHILKASNELIANN
PDRLGKKLWTEDKDGEPISIYCAFNEMDEARFIVGRISDWHDMGGNLSNCAILYRSNAQS
RVLEEALLHKGLAYRIYGGLRFFERQEIKDAMSYLRLINNKDDDAAFERVVNTPARGIGG
RTLDILRSTARQQQLTLWQTCLRALEEKLLSGRAANAIRGFMDLIVEMQQDTEELTLHRT
TDHVIAKSGLKAMYEAEKGEKARSRVENLDELVTAARTFIMPEEIEDMGELNAFLSHAAL
EAGEGQADAFTDAVQLMTLHSAKGLEFPVVFMSGVEEGIFPSQMAMDEGDRLDEERRLCY
VGMTRAMEKLYITYAETRRIYGRENFARPSRFIKEIPTEHVEEIRLKTQVSAPQRAKTSF
TRSIVVNDSGFKVGQGVTHPKFGEGKVTNTEGSGSQARVQVNFYDVGSKWLVVAYARLET
C
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcttctttactagacggcctgaatgatgaacaacgtgcagccgtaggggcg
ccccaatccagtatgttggtattggcgggggctggcagtggcaagactcgggtattgacc
catagaattgcctggctgatgcaggtcgaacagcagagtccatattcaattttagcggta
accttcaccaataaagcggcggcagagatgcgcgagcgagttgagaaggtcagtggtagc
aatatggggcgcatgtggataggtactttccacggtctggcccatcgtctgctgcgaacc
cattatcaagatgctaatttgccccagacgtttcagatcatcgactcagatgatcagtta
cgcttaatcaaacgtattctgaagagccttaatttagacgagaagcaatatccgcctcgt
caggctcagggctatatcaacggtaagaaagatcagggattaagacctaagcatatcgat
gccggtggctttccaatagagcaaaacctattacagatctatcaggtctatcaagagtcc
tgcgatcgggccggtttggtcgattttgccgaaattctattacgtgctcacgagttatgg
ctcaacaaacctcatgttcttaaacactaccaagataggtttaagaatattctggtggat
gagtttcaagataccaacgcgattcagtatgcctggatccgtgtgctggcgggtgaaggt
gctaatgtgatgatcgtcggtgatgacgatcagtccatttatggttggcgcggtgcccaa
gtcgagagtttacacaagtttcttgaagatttccccaaggctagcaccatacgtttggag
cagaattatcgttccactggccatatccttaaagcctccaatgagctgatcgccaataac
ccggatcgcttgggcaagaagttgtggaccgaagacaaagatggcgagcctatctcaata
tactgtgccttcaatgagatggatgaagcccgatttattgttggacgcattagtgattgg
cacgatatgggcggcaatctcagtaattgcgctattctatatcgttctaacgctcagtct
cgagtgctggaggaagccttactccataagggcttagcctatcgtatctacggtggtttg
cgattcttcgagcgacaggagatcaaagatgccatgagttatctgcgtctcatcaacaat
aaagatgatgatgcagccttcgagcgtgtggttaatacgcctgctcgtgggattggtggg
cgtacgttagatattttacgttctacggcaaggcagcaacagttaaccctgtggcaaact
tgcttacgcgccctcgaagagaagttacttagtgggcgagcggcgaatgccatacgtggc
ttcatggatctcatcgtggagatgcagcaagatactgaagagttgaccctgcaccgcaca
actgaccatgtgattgctaaatctggtcttaaggccatgtatgaggctgagaaaggcgag
aaggcgcgttctcgagtggaaaaccttgacgagcttgtgaccgctgcacgtacttttatc
atgcccgaagagattgaagatatgggcgagcttaacgctttcctatcccatgcggcatta
gaggctggagaggggcaggctgatgcattcaccgatgcggtacagctgatgacactacac
tctgccaaaggcctagagtttcctgtggtgtttatgtcgggtgtcgaggagggaatattc
cccagtcagatggctatggatgaaggggatagactcgatgaagagcgccgcctttgttat
gttggtatgacgcgggccatggaaaagctttacatcacctatgccgagacacgtcgaatc
tacggccgggaaaatttcgccagaccgtcacgcttcatcaaagagatcccaacggagcat
gtggaggagatccgccttaagactcaggtgagtgcgcctcaaagggcgaaaacttctttc
acccgtagcattgtggtgaatgattcaggctttaaggttggccaaggggtgacgcatcct
aaattcggtgaaggtaaggtgaccaataccgagggcagtggttctcaagccagagtacaa
gtcaatttctacgatgtcggtagtaagtggttggttgttgcctatgctcgattggaaact
tgctag
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