Shewanella psychrophila: Sps_03292
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Entry
Sps_03292 CDS
T05063
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
spsw
Shewanella psychrophila
Pathway
spsw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sps_03292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsw03019
]
Sps_03292
03400 DNA repair and recombination proteins [BR:
spsw03400
]
Sps_03292
Enzymes [BR:
spsw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sps_03292
Messenger RNA biogenesis [BR:
spsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sps_03292
DNA repair and recombination proteins [BR:
spsw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Sps_03292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AQS38428
UniProt:
A0A1S6HSG5
LinkDB
All DBs
Position
complement(3786370..3788196)
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AA seq
608 aa
AA seq
DB search
MDQVTPQPQSDPLSSSLQSVFGYRTFRKGQREVVEQICAGVDCLVIMPTGGGKSLCYQLP
ALQMPGLTIVVSPLISLMKDQVDSLQQMGVNAGYLNSSQAGAESARILREMHSGELKLLY
VSPERLLQASFIDRLHELHISLFAIDEAHCISQWGHDFRPEYAALGRLRQYFPHVPIMAL
TATADQATRQDICQRLTITPFSLLTSFDRPNIRYTVAEKLNAANQLRQFVTAQNGTSGII
YCGSRRRVDEVAERLRLQGHNADSYHAGRTQEERADVQDRFLKDQLDIVVATVAFGMGIN
KSNVRYVVHYDIPKSVESYYQETGRAGRDGLDSEALMLFDPADIGRVRHLIEQSEPGPQQ
QVELHKLNTMAAFAEAQTCRRQVLLHYFDESAEEPCGNCDICLDPPKRYNGIQDAQKVLS
SIYRLKQGFGINHMIEVLRGSKAANVLDRGHDKLSTWGIGKDKSHEYWLSIIRQIIHLGF
ASQDITRGSSVKLNPSARAVLKGEVELLLAEPRIILQTTTKRRSGSTRAPLNYDRKLFAR
LKMLRRRLAEELDVPPYLVFNDATLAEMAAMTPTSPGEMLAVNGVGERKLSRFGGDFLDE
IANYLADS
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggaccaagtgacgccgcaacctcaatcagatccactttcttcgagcctgcagtcggta
ttcggttatcgcaccttcagaaagggccagcgggaggtggtagaacagatctgtgccggt
gtcgattgcctggtgattatgccgactggtggtggtaagagcctgtgttatcaattgcct
gcattgcagatgcctggcttgaccatagtggtttcaccgttgatctctctgatgaaagat
caggtcgatagtctgcaacagatgggagttaatgccggatatctaaattcatctcaggca
ggggcagagagtgccagaattcttagggagatgcacagcggagaactaaagctgctctat
gtctctcccgagcgcttgctacaagccagttttatagaccgtctacatgaactgcatatt
tcacttttcgccatagatgaggcccactgtatctctcaatggggccatgattttaggccc
gagtatgcggcgttaggcaggctgagacaatattttccccatgtgcctatcatggcactg
acggccactgcagatcaggctaccaggcaggatatctgtcagcgtctgaccattactcct
ttctctttgcttaccagtttcgatcgtccgaatattcgctatacagtcgccgagaaactc
aatgctgctaatcagttgcgtcagttcgtgacagcccaaaatggcaccagtggcatcatc
tattgtggcagtcgcagacgggtcgatgaggttgcggagcgtctgaggcttcagggtcat
aatgccgactcttatcatgcaggcaggactcaggaggagagagccgatgttcaagaccgc
ttcctgaaagatcaactcgatatcgtggtggcaaccgtggcatttggcatgggcataaat
aagtccaacgttcgttacgtggtgcattatgatattcccaagagcgtggagtcatattat
caggaaacggggcgcgccggacgtgatggcttagattctgaggccttaatgctatttgat
cctgcagatattggccgggtgcgccacttgattgagcaatctgagccaggcccacaacag
caggtagaattgcataagctcaacactatggctgcctttgccgaggcgcagacttgccgt
cgtcaggtgttgctgcactattttgatgagagtgccgaagagccctgcggtaactgtgat
atctgcttggacccgcctaaacgatataatggaattcaagatgcgcagaaggtgctctca
agcatctatcgcttgaagcaaggcttcggtatcaatcacatgatcgaggtgctacgaggc
tctaaggccgccaatgtcttggaccgcggccatgacaaattatcaacttggggaataggc
aaagataagagtcatgaatattggctgagtattatcaggcagataattcatttaggcttt
gccagtcaagatattacccggggatcctcggtcaagttgaacccttcggcgagagctgtg
ctgaaaggtgaggtggagttattactcgccgagccgagaatcatactgcaaactacgact
aagcgtcgtagcggcagtactcgtgcgccattgaattacgatcgtaagttatttgccaga
ctgaagatgctacgcagacgcttggctgaagagctggatgtgcctccttatctggtattc
aacgatgcgactctggccgagatggcggctatgacgcctacaagcccgggggaaatgctg
gcagttaacggggtcggtgaacgtaagttaagccgtttcggtggtgacttcctcgatgag
atagcgaactatctagctgatagttag
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