Shewanella psychrophila: Sps_03431
Help
Entry
Sps_03431 CDS
T05063
Name
(GenBank) DNA polymerase III epsilon subunit-like 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
spsw
Shewanella psychrophila
Pathway
spsw03030
DNA replication
spsw03430
Mismatch repair
spsw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sps_03431
03430 Mismatch repair
Sps_03431
03440 Homologous recombination
Sps_03431
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spsw03032
]
Sps_03431
03400 DNA repair and recombination proteins [BR:
spsw03400
]
Sps_03431
Enzymes [BR:
spsw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Sps_03431
DNA replication proteins [BR:
spsw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Sps_03431
DNA repair and recombination proteins [BR:
spsw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Sps_03431
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
CAF1
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
AQS38558
UniProt:
A0A1S6HSY6
LinkDB
All DBs
Position
complement(3947816..3948499)
Genome browser
AA seq
227 aa
AA seq
DB search
MISQLLKSKLCWRAFRCRSEVMRLYHRGLMSVIAQDISQTQLIALDLEMTGLDPNHDQIL
SIGLIPIENNLLMLDKAEQKLIKVEGGVGQSAAIHGILDNHLEDAIEIDQAIAWFVEKTQ
GKVLVAHHAPLDITFLQNAMTNTMGEPVKLLAIDTLAVERKRLLRKHDVLKEGSLRLGAC
RTRYGLPVYAAHNALVDALACGELLLAQIAAIGQGESLTVAELLAIK
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
gtgatatctcagctgcttaaatctaagttatgttggcgtgcctttcgttgtcgctcggaa
gtgatgagactatatcatcgcgggttaatgtccgtgatagctcaagatatcagtcaaact
cagctaattgcactggatttggaaatgacaggactggacccaaatcatgatcaaattctc
agtatcggcttaattcccattgaaaataacctgctgatgctcgataaggcggagcagaag
ttaatcaaagttgagggtggtgtcggtcaaagtgcggctatccacggtattttagataac
catctagaagatgctatagagatagatcaagcgattgcctggtttgttgaaaagacccaa
ggtaaggtgctggtggctcatcatgcacctctggatataacattcctacaaaatgccatg
actaatacaatgggagagccggttaaactgcttgcgatagatacattagccgttgagcgc
aaacgcttgctgagaaagcatgatgtattaaaagagggctccttgagactcggtgcctgt
cgcactcgatacggtctacctgtttacgccgcccataatgccttggtcgatgcattagca
tgtggtgagttgttgctcgctcagattgcagctattggccagggagagtcgttaacggtt
gccgagctactcgcaattaaataa
DBGET
integrated database retrieval system
